Gene detail

Detail information of GWHGAAZE012983

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO56747.1	0	hypothetical protein CISIN_1g035655mg [Citrus sinensis]
Swissprot	tr\|O81291\|LRK44_ARATH	2E-118	L-type lectin-domain containing receptor kinase IV.4 (Precursor)
trEMBL	tr\|A0A067EZV9\|A0A067EZV9_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO56747.1}
TAIR10	AT5G01540.1	3E-57	lectin receptor kinase a4.1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94803768	94805813	+
GWHAAZE00000003	mRNA	94803768	94805813	+
GWHAAZE00000003	exon	94803768	94804463	+
GWHAAZE00000003	exon	94804563	94804860	+
GWHAAZE00000003	exon	94805092	94805813	+
GWHAAZE00000003	CDS	94803768	94804463	+
GWHAAZE00000003	CDS	94804563	94804860	+
GWHAAZE00000003	CDS	94805092	94805813	+

Transcript Sequence
>GWHTAAZE012997 ATGGCTACTACTACAATCATTTCCTTAGCTTTCATCCTCTCTCTTCTCTCTACTTTTCCACCATCTCAACCCTTTGATTTCATTTACCAAGGCTTCAATAATGAAACTAACCTTATCCTCGATCAAACCACAATCTTAAAACCAAGTGGTGCACTTAGACTCACTAACAGCTCTCACAATGTCATAGGCCATGTTTTTCACCCTACCCCAATACAAATCTTCAACACAACTTCTCCATCTTTATCTTCTTTTAGTACAAAATTCGTTTTCGCCATAGTCTCGCCTGAAGGCAAGCCAGGCGGCTTTGGCCTGGCCTTCACCTTGTCCCCTCGCCCCGAGTTCCCTGGGGCCGAGGAAGGTCACTTCCTCGGGATACTCAACTCAACAAACAATGGGAGTCTCTCCAATCATATCTTCGCGGTCGAGTTTGATACCGTGACTGGTATCAACAAAGTTTCGGACACGAAAGGGAACCACGTCGGCTTAAATAACAATAGCATGTTGTCATTTAAATCCGAAACGGCAGCTTATTATGTTAACAACACAAACGTGAAAGAAGTTCTGCCTTTAGATAGTGGAGAGCCAATCCAAGCTTGGATTGATTATGATGGAATCAAAAAAGTCATCAATGTAACAATCTCCCCTATATCTGTCCCCACCAAACCAAGTAGGCCACTAATCTCAACACCCATAGACCTAAACGGATTAGCCGACGATCTTGATCTTTCTTCATTACCAAAGCTGCCAGTCGAGAAAAAATCTACCCCTTTTAATCCCCTAATCAAAGCACTAATTGCAGCCCTCTCTGTTATAATACTTGTATTGTTTTTCACACTACTTGCTATCGCTTTTTATAGGCGAGCCATTATGTTTGAACCGAATCTGGAGGCTTGGGAGTTGGATTGTCCTCATAGGTTCAAGTACAAGGATCTTTATAAGGCTACAAAGGGTTTTAAAGAAAGCGAACTGGTTGGTATCGGTGGATTTGGCACAGAAAACGGGTTCATTCTAAACTGGGAGCAAAGGTACAACATTGTAAAAGGCGTTGCTTCGGGGCTGTTGTACCTTCATGAGGAGTGGGAACAAGTGGTTGTACATAGAGACGTTAAGTCAAGCAATGTGTTAATTGATGGTGAAATGAATGGTAAGCTTGGGGATTTTGGGCTAGCTAGGCTACACGACCATGATCAAACCTCACGCACCACTAGTGTTGTGGGCACGATTGGCTACATCGCACCAGAGTTGACTAGGACTGGCAAGGCCTCAACAAGGTCAGATGTGTTTGCATTTGGTGTTCTTTTACTAGAAGTGGTTTGTGGAAGAGGACCCATTGTGCATGATGAGGAGAAGGGCCATGTGATCCTAGTCGACTGGGTTATCGCGTGCGTGAAAACGGGTCAGGTCCTTGACTTGGTTGACCCGAGATTGGGGTCAGTTTATGTGGTGGAAGAGGTGGAATTGTTACTTGGACTTGGCCTTCTTTGTTCACATTCAAGGCCAGAAGCTAGGCCTTCAATGAGGCAAATAATGAGGTATCTTAATGGAGAGGAGTTGCTTAACGTGTTTGATAAATTGGGTTCTTTTAATTCAAGAGAGATGGATGAACTTACTTCAAGGTTTTTAGAGTTAATTGTTTCAAGTGATACCAACACCACTTCTTATTGTTCTCTCTCTATAGGTGACGTGTCTTCAAGTTCTCTCCAAGACGGTAGATAG

Network for GWHGAAZE012983

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	26	236	3.50E-56
PF00069.26	Pkinase	339	511	1.10E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	1.055
	SRR3591707	mature leaf	12.574
	SRR3591708	Shoot apex	0.332
	SRR3591709	Stem	2.401
	SRR3591710	White floral bud	2.874
	SRR3591711	White flower	21.658
	SRR3591712	Green floral bud	2.052
	SRR3591713	Yellow flower	48.912
SRP173429	SRR8316895	Juvenile bud stage	0.605
	SRR8316896	Juvenile bud stage	1.282
	SRR8316897	Juvenile bud stage	0.366
	SRR8316894	Third green stage	0.819
	SRR8316900	Third green stage	0.496
	SRR8316901	Third green stage	0.656
	SRR8316898	Complete white stage	0.393
	SRR8316899	Complete white stage	2.003
	SRR8316903	Complete white stage	0.543
	SRR8316902	Silver flowering stage	3.909
	SRR8316904	Silver flowering stage	3.784
	SRR8316905	Silver flowering stage	2.368
	SRR8316906	Gold flowering stage	18.678
	SRR8316907	Gold flowering stage	12.125
	SRR8316908	Gold flowering stage	23.233
SRP132670	SRR6706286	Control	2.212
	SRR6706287	Light intensity 50%	2.237
	SRR6706288	Light intensity 20%	1.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.568
	CNS0095593	Slightly white alabastrum(diploid) 2	0.415
	CNS0095594	Slightly white alabastrum(diploid) 3	1.376
	CNS0095595	Whole white alabastrum(diploid) 2	0.285
	CNS0095596	Whole white alabastrum(diploid) 3	0.099
	CNS0095597	Whole white alabastrum(diploid) 4	0.256
	CNS0095598	Silvery flower (diploied) 1	2.665
	CNS0095599	Silvery flower (diploied) 2	0.475
	CNS0095600	Silvery flower (diploied) 3	4.198
	CNS0095601	Golden flower (diploid) 1	1.981
	CNS0095602	Golden flower (diploid) 2	7.351
	CNS0095603	Golden flower (diploid) 3	7.626
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.017
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.063
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.067
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.030
	CNS0095610	Silvery flower (tetraploid) 1	6.280
	CNS0095611	Silvery flower (tetraploid) 2	1.542
	CNS0095612	Silvery flower (tetraploid) 3	1.997
	CNS0095613	Golden flower (tetraploid) 1	12.597
	CNS0095614	Golden flower (tetraploid) 2	10.514
	CNS0095615	Golden flower (tetraploid) 3	10.875
CRA001975	CRR073297	Stem 1	0.245
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.102
	CRR073300	Leaf 1	0.266
	CRR073301	Leaf 2	0.284
	CRR073302	Leaf 3	0.272
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.093
	CRR073305	Juvenile bud 3	0.027
	CRR073306	Third green 1	0.505
	CRR073307	Third green 2	0.096
	CRR073308	Third green 3	0.783
	CRR073309	Second white 1	1.652
	CRR073310	Second white 2	3.487
	CRR073311	Second white 3	3.976
	CRR073312	Silver flowering 1	25.138
	CRR073313	Silver flowering 2	17.012
	CRR073314	Silver flowering 3	18.895
	CRR073315	Gold flowering 1	2.128
	CRR073316	Gold flowering 2	3.542
	CRR073317	Gold flowering 3	4.163
	CRR073318	Tawny withering 1	2.978
	CRR073319	Tawny withering 2	2.306
	CRR073320	Tawny withering 3	0.440