Gene detail

Detail information of GWHGAAZE012982

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009621639.1	6.31613E-71	PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform X1 [Nicotiana tomentosiformis]
trEMBL	tr\|M1CJ64\|M1CJ64_SOLTU	2E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068515}
TAIR10	AT1G07080.1	1E-48	Thioredoxin superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94760497	94762048	+
GWHAAZE00000003	mRNA	94760497	94762048	+
GWHAAZE00000003	exon	94760497	94760778	+
GWHAAZE00000003	exon	94760868	94760933	+
GWHAAZE00000003	exon	94761225	94761365	+
GWHAAZE00000003	exon	94761621	94761683	+
GWHAAZE00000003	exon	94761818	94762048	+
GWHAAZE00000003	CDS	94760497	94760778	+
GWHAAZE00000003	CDS	94760868	94760933	+
GWHAAZE00000003	CDS	94761225	94761365	+
GWHAAZE00000003	CDS	94761621	94761683	+
GWHAAZE00000003	CDS	94761818	94762048	+

Transcript Sequence
>GWHTAAZE012996 ATGGCTTCTTTTAAACCAGTCTTTGCATTCCTTCTCACAATTTTGCTGCTCCCTTTGCCCATATCTCCAAATCATGCATCTTCAAATGATGATGATGTGAAGAATAATAAAGATGACAAGGTTACTCTCTCATTGTACAACGAATCTTTCTGTCCTTACAGCGCGAATTTCATTGCGAATCAACTGGGAAAGGTCTTCGAAACAGATCTAATCTCAGTTGTCAATCTAAGGGTGGTCCCTTGGGGTAACATGCAACGCAATAACAACAGTTGGATTTGTCAGCATGGCCGCATTGAGTGCGCATTTGATATAGTGGAAGCCTGTGCCATACACGTTTGGCCTGATCCAGCAGTGCATTTTAAGTTTATTAAGTGCATTGAGAAGGGAGAGTTGGAGGGCAGGCAAAGTCAGTGGAAATCTTGCTATGGAGCAGTGAAGCTGAATCCAAAACCCCTTGCGGATTGCTACACTACTAGAACTGGAACTGATCTAGTTTTAAAATATGCTGATGAAACTGATCGTCTTAACCCCCCTCTCAGATTTGTTCCATGGGATTACCAAAATTTCATAGCCTATATCTGCAAGGCTTACTCAGGCCGTAGGAGACCCAATGCTTGCCAGCAACAATTTAGAATCAACTCGTTCAGAACGAAAATTTCTACAAATAAAGTTTGCTATAGAGGAAAGGCTAAAATGACATCACTCTTGCTTAAGGAGAAAAGGCGAGAATTAGCAAAAGCGTCATCATCACACACCCACAAGAAGAAGGAAACGCTAACCTAA

Network for GWHGAAZE012982

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03227.17	GILT	43	142	3.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08059	IFI30, GILT	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.051
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.393
	SRR3591709	Stem	0.129
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.094
	SRR3591712	Green floral bud	0.147
	SRR3591713	Yellow flower	0.149
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.082
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.002
	SRR8316900	Third green stage	0.397
	SRR8316901	Third green stage	0.087
	SRR8316898	Complete white stage	0.046
	SRR8316899	Complete white stage	0.007
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.024
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.163
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.061
SRP132670	SRR6706286	Control	0.063
	SRR6706287	Light intensity 50%	0.150
	SRR6706288	Light intensity 20%	0.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.087
	CNS0095593	Slightly white alabastrum(diploid) 2	0.069
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.163
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.053
	CNS0095601	Golden flower (diploid) 1	0.295
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.060
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.024
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.125
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.029
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.090
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.122
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.120
	CRR073298	Stem 2	0.108
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.010
	CRR073301	Leaf 2	0.258
	CRR073302	Leaf 3	0.014
	CRR073303	Juvenile bud 1	0.004
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.019
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.003
	CRR073319	Tawny withering 2	0.188
	CRR073320	Tawny withering 3	0.009