Gene detail

Detail information of GWHGAAZE012981

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009621639.1	3.02753E-80	PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform X1 [Nicotiana tomentosiformis]
trEMBL	tr\|M1CJ64\|M1CJ64_SOLTU	5E-80	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068515}
TAIR10	AT1G07080.1	5E-53	Thioredoxin superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94757281	94758800	+
GWHAAZE00000003	mRNA	94757281	94758800	+
GWHAAZE00000003	exon	94757281	94757544	+
GWHAAZE00000003	exon	94757634	94757699	+
GWHAAZE00000003	exon	94757985	94758125	+
GWHAAZE00000003	exon	94758387	94758449	+
GWHAAZE00000003	exon	94758570	94758800	+
GWHAAZE00000003	CDS	94757281	94757544	+
GWHAAZE00000003	CDS	94757634	94757699	+
GWHAAZE00000003	CDS	94757985	94758125	+
GWHAAZE00000003	CDS	94758387	94758449	+
GWHAAZE00000003	CDS	94758570	94758800	+

Transcript Sequence
>GWHTAAZE012995 ATGGCTTCTTTTCAACCAGTCTTCGCATTCCTTCTCACAATTTTGCTGCTGCCATTGCTCATATCTTCAAACCATGCATCTTCAAATGATGATGATGATAAGGTTACTCTCTCATTGTACTATGAATCTCTCTGTCCTTACTGCGCGAATTTCATCGCGAATCAGCTGGGAAAGGTCTTTGAAACAGATCTGATCTCAGTCGTCAATCTAAGGCTGGTCCCTTGGGGTAACACTCAACGCACTAACAACAGTTGGATTTGTCAGCATGGCCGCAATGAATGCGCACTTGATATAGTGGAAGCCTGTGCCATACACATCTGGCCTGATCCGGCAGTGCATTTTAAGTTTATTCAGTGCATTGAGAAGGGAGAGTTGGAAGGCAGGCAAAGTCAGTGGAAATCTTGCTATGGAGCACTGAAGCTGAATCCGAAACCCCTTTCGGATTGCTACACAACTAGAACTGGAATTGATCTAGTTCTAAAATACGCCGATGAAACTGATCATCTTAATCCCCCACACAGATTTGTTCCATGGGATTACCAAAATTTCGTAGCCTACATCTGCAAGGCTTACTCGGGCCGTAGGAGACCCAATGCTTGCCAGCACCGATTTAGTATCAACTCGTTCAGCACGAAAAATTCTACAACTAAAGTTTGCTATAGAGGAAAGGCTAAAATGACATCACTCTCACTTAAGGACACAAGGCGAGGATCAGCAAAAGCTTCATCATCACGCACCCACGAGAAGAAAGAAACGCTAGCCTAA

Network for GWHGAAZE012981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03227.17	GILT	37	136	8.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08059	IFI30, GILT	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.386
	SRR3591706	second leaf	13.396
	SRR3591707	mature leaf	1.378
	SRR3591708	Shoot apex	42.689
	SRR3591709	Stem	24.380
	SRR3591710	White floral bud	4.094
	SRR3591711	White flower	4.243
	SRR3591712	Green floral bud	19.223
	SRR3591713	Yellow flower	0.265
SRP173429	SRR8316895	Juvenile bud stage	10.868
	SRR8316896	Juvenile bud stage	18.698
	SRR8316897	Juvenile bud stage	5.993
	SRR8316894	Third green stage	10.942
	SRR8316900	Third green stage	29.118
	SRR8316901	Third green stage	18.212
	SRR8316898	Complete white stage	4.496
	SRR8316899	Complete white stage	25.481
	SRR8316903	Complete white stage	3.673
	SRR8316902	Silver flowering stage	0.545
	SRR8316904	Silver flowering stage	0.587
	SRR8316905	Silver flowering stage	0.047
	SRR8316906	Gold flowering stage	0.773
	SRR8316907	Gold flowering stage	1.294
	SRR8316908	Gold flowering stage	1.391
SRP132670	SRR6706286	Control	34.712
	SRR6706287	Light intensity 50%	41.044
	SRR6706288	Light intensity 20%	49.693
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.301
	CNS0095593	Slightly white alabastrum(diploid) 2	15.323
	CNS0095594	Slightly white alabastrum(diploid) 3	10.000
	CNS0095595	Whole white alabastrum(diploid) 2	14.387
	CNS0095596	Whole white alabastrum(diploid) 3	4.843
	CNS0095597	Whole white alabastrum(diploid) 4	8.409
	CNS0095598	Silvery flower (diploied) 1	12.215
	CNS0095599	Silvery flower (diploied) 2	13.626
	CNS0095600	Silvery flower (diploied) 3	4.316
	CNS0095601	Golden flower (diploid) 1	6.048
	CNS0095602	Golden flower (diploid) 2	4.641
	CNS0095603	Golden flower (diploid) 3	6.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.824
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.725
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.549
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.275
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.938
	CNS0095610	Silvery flower (tetraploid) 1	1.185
	CNS0095611	Silvery flower (tetraploid) 2	2.643
	CNS0095612	Silvery flower (tetraploid) 3	2.171
	CNS0095613	Golden flower (tetraploid) 1	0.547
	CNS0095614	Golden flower (tetraploid) 2	0.563
	CNS0095615	Golden flower (tetraploid) 3	0.138
CRA001975	CRR073297	Stem 1	30.430
	CRR073298	Stem 2	29.029
	CRR073299	Stem 3	26.147
	CRR073300	Leaf 1	46.063
	CRR073301	Leaf 2	44.172
	CRR073302	Leaf 3	45.530
	CRR073303	Juvenile bud 1	36.812
	CRR073304	Juvenile bud 2	27.588
	CRR073305	Juvenile bud 3	29.256
	CRR073306	Third green 1	0.599
	CRR073307	Third green 2	0.365
	CRR073308	Third green 3	1.551
	CRR073309	Second white 1	0.190
	CRR073310	Second white 2	0.330
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.308
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.377
	CRR073316	Gold flowering 2	4.987
	CRR073317	Gold flowering 3	5.505
	CRR073318	Tawny withering 1	47.242
	CRR073319	Tawny withering 2	42.159
	CRR073320	Tawny withering 3	57.350