Gene detail

Detail information of GWHGAAZE012973

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009776315.1	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Nicotiana sylvestris]
Swissprot	tr\|C0LGP9\|IMK3_ARATH	Probable leucine-rich repeat receptor-like protein kinase IMK3 (Precursor)
trEMBL	tr\|M1B0H4\|M1B0H4_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400034324}
TAIR10	AT3G51740.1	inflorescence meristem receptor-like kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94638273	94641334	+
GWHAAZE00000003	mRNA	94638273	94641334	+
GWHAAZE00000003	exon	94638273	94638276	+
GWHAAZE00000003	exon	94638420	94640033	+
GWHAAZE00000003	exon	94640709	94641334	+
GWHAAZE00000003	CDS	94638273	94638276	+
GWHAAZE00000003	CDS	94638420	94640033	+
GWHAAZE00000003	CDS	94640709	94641334	+

Transcript Sequence
>GWHTAAZE012987 ATGGGCAAATCTTTGGATGGAGTAACTGTGACCCAGGCAGATTACCAAGCACTCAAGGCCTTCAAGCAAGAACTCGTAGATCCAAATGGCATGCTGAGGAGCTGGAACAACAACAGCAATGGAGCTTGTTCAGGTCAATGGGCTGGAATCAAATGTGCTAATGGACAAGTTATTGCCATACAGCTCCCGTGGAAAGGATTAAGTGGTCGAATCACTGACAAAATTGGGCAGCTTCAAGGCCTTAGAAGACTCAGTCTCCATGACAATTTCCTCACTGGACCAGTCCCTAATTCTCTTGGGTTACTTCAGCATCTAAGAGGGGTTTATCTCTTCAATAATCGGCTTTCGGGTTCTATTCCACCTTCCATCGGGGCATTTGTTCAAACACTTGATCTCAGTAACAATCAGCTTGTGGGTAACATTCCTCCTAGTCTTGCAAACTCCACCAGGATATATAGGCTCAATCTTAGCTTCAATTTGCTTTCGGGTTCCATTCCTGAGAGTTTCACTCATTTCCCCGCTCTCACTTTCCTTGCTCTTCAACACAACAATCTCTCTGGCATTATTCCAAACATTTGGGGTGCTAAAGTTAGTAACTCTTCTTATATGCTCCAATCTTTAACCCTTGATCATAATCTTCTTGTGGGTCAAATTCCGACTTCACTAAGCAAGTTAACTTCCCTTGAGGTAATTAATTTGAGCCATAACAGAATCAATGGCACTATACCCAATGAATTTAGTAGCCTCTCTAGGCTGCAAGTTCTTGATTTGTCCAACAATGGCATCAATGGCCACATCCCACCCTCTATTGGAAACATATCAACCCTCAACCAAATTGATCTTTCCAATAACACTTTCAATGGGGGGATTCCAAATTCACTTGCAAACTTACCAAATCTCACTTCTTTCGATGTTTCGTACAATAATCTTTCAGGCATTGTTCCTTCTCGTCTTCTTCAAAAGTTCAACTCAAGCTCTTTCGTAGGGAACCTTGAACTTTGTGGCTATAGTGCATCGACTCTATGCCCATCTCCACCGCCTCAAACACTTCCATCTCCGCCTCCAAATGGTTCAAAAAGTCACCACCACCGGGGACTAAGTACTAAAGACATAATCCTCATAGCTGCTGGTGCCCTTTTAGTTGTTTTACTTCTTTTATGTTGCATGTTGCTCTGCTGTTTGATAAGGAAAAAGGCTAAATCCAAAGCAAAAACAGCCAAAACAGCAAGTCCGGCAGCAGCGGTTGGAAGCGGGAAGGCGGTTCCAGCGGTTGAAGTAGAATCTGGTGGTGATTCTGGTGGGAAACTAGTCCATTTCGATGGCCCATTTGTTTTCACGGCCGATGATTTGTTATGTGCTACTGCTGAGATAATGGGGAAGAGTACTTATGGGACTGCGTACAAGGCTACATTGGAGGACGGTAATCATGTTGCGGTGAAGAGGTTGAGGGAGAAAATTGCCAAGAGCCAGAAGGAGTTTGAAGCCGAGATTGCCGTGCTCGGGTTGATTCGACACCCCAATATATTGGCCCTTAGGGCATATTATTTGGGGCCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGATCAATGGCAGCCTTGCTTCTTGTCTCCATGCTCGAGGACCAGAAACTAGCATACCATGGCCAACAAGAATGAACATAGCAATGGGGATCACAAGAGGGCTATGCTATCTTCACACACAAGAGAACATAATCCATGGTAATCTTACCTCAAGCAACGTTTTACTTGATGAACAAAACAACCCCAAGATAGCTGATGTTGGCCTATCCCGGCTAATGACCAATGCTGCAAACACAAATGTGATAGCCACAGCGGGCACCCTAGGTTATCGTGCACCAGAGCTCTCGAAGCTCAAGAACGCCACTGCAAAAACTGACATATACAGCCTCGGAGTGATCATATTAGAGCTGTTAACTGGGAAATCACCTAGTGAGGGAACGGACGGCCTTGATTTGCCACAGTGGGTTGCGTCGATTGTGAAAGAAGAGTGGACTAATGAAGTGTTTGATCTTGAACTTATGAGGGACGCGTCTAATAATACTAATGTGGGGGATGAGTTGCTTAATACGCTTAAATTGGCGCTCCATTGCGTGGACCCCTCGCCTACAGAACGGCCAGAGGCTGAACAAGTTCTTCAGAAATTAGAGGAGATTAAACCGGAGATGGCTGGTGCTAGCAGTTCAGTTGATGATGATGGTGCTGGTGCTGGAGTTCCATAA

Network for GWHGAAZE012973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	13	52	5.70E-10
PF13855.7	LRR_8	128	185	2.40E-07
PF13855.7	LRR_8	204	262	4.30E-11
PF00069.26	Pkinase	455	721	2.10E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.990
	SRR3591706	second leaf	14.577
	SRR3591707	mature leaf	0.633
	SRR3591708	Shoot apex	117.543
	SRR3591709	Stem	21.609
	SRR3591710	White floral bud	2.207
	SRR3591711	White flower	0.702
	SRR3591712	Green floral bud	2.446
	SRR3591713	Yellow flower	0.071
SRP173429	SRR8316895	Juvenile bud stage	35.440
	SRR8316896	Juvenile bud stage	26.569
	SRR8316897	Juvenile bud stage	16.785
	SRR8316894	Third green stage	9.034
	SRR8316900	Third green stage	6.449
	SRR8316901	Third green stage	7.950
	SRR8316898	Complete white stage	0.427
	SRR8316899	Complete white stage	7.844
	SRR8316903	Complete white stage	1.749
	SRR8316902	Silver flowering stage	0.119
	SRR8316904	Silver flowering stage	0.187
	SRR8316905	Silver flowering stage	0.055
	SRR8316906	Gold flowering stage	0.188
	SRR8316907	Gold flowering stage	0.359
	SRR8316908	Gold flowering stage	0.557
SRP132670	SRR6706286	Control	10.729
	SRR6706287	Light intensity 50%	9.656
	SRR6706288	Light intensity 20%	11.866
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.500
	CNS0095593	Slightly white alabastrum(diploid) 2	14.882
	CNS0095594	Slightly white alabastrum(diploid) 3	14.611
	CNS0095595	Whole white alabastrum(diploid) 2	7.777
	CNS0095596	Whole white alabastrum(diploid) 3	2.727
	CNS0095597	Whole white alabastrum(diploid) 4	5.953
	CNS0095598	Silvery flower (diploied) 1	13.740
	CNS0095599	Silvery flower (diploied) 2	19.091
	CNS0095600	Silvery flower (diploied) 3	3.503
	CNS0095601	Golden flower (diploid) 1	5.024
	CNS0095602	Golden flower (diploid) 2	4.093
	CNS0095603	Golden flower (diploid) 3	3.966
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.800
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.625
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.512
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.906
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.946
	CNS0095610	Silvery flower (tetraploid) 1	0.619
	CNS0095611	Silvery flower (tetraploid) 2	1.274
	CNS0095612	Silvery flower (tetraploid) 3	0.957
	CNS0095613	Golden flower (tetraploid) 1	0.200
	CNS0095614	Golden flower (tetraploid) 2	0.292
	CNS0095615	Golden flower (tetraploid) 3	0.079
CRA001975	CRR073297	Stem 1	29.251
	CRR073298	Stem 2	26.710
	CRR073299	Stem 3	11.867
	CRR073300	Leaf 1	11.418
	CRR073301	Leaf 2	9.975
	CRR073302	Leaf 3	2.018
	CRR073303	Juvenile bud 1	2.315
	CRR073304	Juvenile bud 2	0.629
	CRR073305	Juvenile bud 3	3.214
	CRR073306	Third green 1	0.369
	CRR073307	Third green 2	0.658
	CRR073308	Third green 3	0.550
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.252
	CRR073311	Second white 3	0.022
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.716
	CRR073316	Gold flowering 2	1.494
	CRR073317	Gold flowering 3	0.525
	CRR073318	Tawny withering 1	31.072
	CRR073319	Tawny withering 2	29.036
	CRR073320	Tawny withering 3	27.273