Gene detail

Detail information of GWHGAAZE012954

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHF97547.1	0	putative serine/threonine-protein kinase WNK5 [Gossypium arboreum]
Swissprot	tr\|Q9SCU5\|WNK5_ARATH	0	Probable serine/threonine-protein kinase WNK5
trEMBL	tr\|V4SZX9\|V4SZX9_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR42796.1}
TAIR10	AT3G51630.2	1E-162	with no lysine (K) kinase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94204486	94209599	+
GWHAAZE00000003	mRNA	94204486	94209599	+
GWHAAZE00000003	exon	94204486	94204602	+
GWHAAZE00000003	exon	94206193	94206458	+
GWHAAZE00000003	exon	94206566	94206789	+
GWHAAZE00000003	exon	94206957	94207114	+
GWHAAZE00000003	exon	94207387	94207729	+
GWHAAZE00000003	exon	94208497	94208834	+
GWHAAZE00000003	exon	94209384	94209599	+
GWHAAZE00000003	CDS	94204486	94204602	+
GWHAAZE00000003	CDS	94206193	94206458	+
GWHAAZE00000003	CDS	94206566	94206789	+
GWHAAZE00000003	CDS	94206957	94207114	+
GWHAAZE00000003	CDS	94207387	94207729	+
GWHAAZE00000003	CDS	94208497	94208834	+
GWHAAZE00000003	CDS	94209384	94209599	+

Transcript Sequence
>GWHTAAZE012968 ATGTACAAGAAGAAGAAGACTGCACAGATGAAGAAATCATCAAGTGTTGTTGAACACGGAGCAAAAAAGGAGTCATCTTATTACATGGAAATGGATCCATCTGGTCGATATGGACGCTTTAGAGAAATTCTGGGTAAAGGAGCAATGAAAACAGTGTACAAGGCATTTGATGAGATTCTTGGAATGGAGGTAGCTTGGAACCAAGTCATACTTAATGATGTTTTCCAATCGCCAGAAGAACTCGAACGACTCTACTCAGAGGTCCACCTCCTCAACACCCTCCACCATCCCTCCATCATGAAATTTTACACCTCTTGGATCAACGCTGATCGAAGAACTTTCAACTTCATCACCGAAATGTTTACCTCTGGCACTCTCAGAGAATATAGGCAAAAATACGAGCGAGTGGATATTCGAGCAGTTAAAACCTGGGCACACCAAATACTAGAAGGGTTGGCTTATCTACATGGGCATGATCCACCGGTCATCCATCGAGACCTTAAGTGCGACAACATCTTTGTTAATGGCCATCTTGGACAAGTCAAGATTGGTGATCTAGGGTTAGCAGCCACTCTTCGCGACTCCCAACATGCCCACAGTGTCATAGGGACGCCTGAATTCATGGCACCGGAATTATACGAAGAGGAATACGATGAGCTCGTAGACATATACTCCTTTGGCATGTGTGTATTAGAGATGCTTACTTGCGACTATCCATATAGCGAGTGCTCCAACCCTGCGCAAATCTACAAGAAAGTTACTTCAGGAAAGCTACCTGCAGCATTCTATCGGATTCAAGATGATGAAGCCCGAGAATTTGTAGGAAAATGTTTAGAGAATGCTTCAAAGAGACCATCTGCTAGTGAGCTGTTGATGGATCCATTTCTTTCTCTTGGTGAACATGAGCATCCATTGCTTGTCACTCCAATTAAGACACCAACTAGTATTAGTAGTCCAAAGTCGACTTCACATATCGAAGCAATTCCACCGGTTGAGATGCCGCCTTTGCTGGCAAATCTAACAAGGAATACGGACATGACGATCACTGGGACGATGAACCCGGAGAATGATACTATCTTTCTCAAAGTTCAGATTTCTGATCAAGATGGTAAAGCAAGAAACATATACTTCCCATTTGACACAGTGAGTGACACTGCAATTGATGTGGCCGTGGAAATGGTGAAGGAACTAGACATCACTGATTGGGACCCATTCGACATTGCTGAGATGATCGACAATGAGATTTCTGCTCTTGTCCCAACTTGGAAGGACGATTGTGATTCACCCAATCAAAATCTTCAAGATCAGCAGCACAGCTTCAACTATGATGACTGCGATGATGATGAAAATAGGACCCACCACCCCTTCTTTTCTCTCTCCTCCCGTTCTTCCTCCCAAGCTTCTCTCTCTAGATCTCCTGATTTTTACACTTCCTGCAGCACCCAAATGGAGAAGAGAAACAAATGTACGAGGTTCTGCCCTGAAGATACTCACAGAGCTTGTAACCGTAACCATCAGCTCAAGATAGCAAGGATGCGATCATTTATGGATATCCGGAGCCAATTGCTGCACAAGTCTCTAGTGGAGGAGATAAACAAGCGGCGCTTATTCAATACAGTTGGTGCTGTCGAGAATATTGGCTATCATGCGCCTTATTGGTGA

Network for GWHGAAZE012954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	42	296	9.60E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.673
	SRR3591706	second leaf	12.581
	SRR3591707	mature leaf	161.150
	SRR3591708	Shoot apex	3.341
	SRR3591709	Stem	195.504
	SRR3591710	White floral bud	11.786
	SRR3591711	White flower	2.088
	SRR3591712	Green floral bud	5.724
	SRR3591713	Yellow flower	0.397
SRP173429	SRR8316895	Juvenile bud stage	1.953
	SRR8316896	Juvenile bud stage	2.328
	SRR8316897	Juvenile bud stage	0.501
	SRR8316894	Third green stage	1.173
	SRR8316900	Third green stage	1.428
	SRR8316901	Third green stage	1.229
	SRR8316898	Complete white stage	0.195
	SRR8316899	Complete white stage	3.335
	SRR8316903	Complete white stage	1.203
	SRR8316902	Silver flowering stage	5.840
	SRR8316904	Silver flowering stage	9.106
	SRR8316905	Silver flowering stage	6.222
	SRR8316906	Gold flowering stage	16.583
	SRR8316907	Gold flowering stage	18.353
	SRR8316908	Gold flowering stage	10.536
SRP132670	SRR6706286	Control	1.971
	SRR6706287	Light intensity 50%	2.033
	SRR6706288	Light intensity 20%	1.978
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.382
	CNS0095593	Slightly white alabastrum(diploid) 2	1.706
	CNS0095594	Slightly white alabastrum(diploid) 3	1.559
	CNS0095595	Whole white alabastrum(diploid) 2	1.081
	CNS0095596	Whole white alabastrum(diploid) 3	0.849
	CNS0095597	Whole white alabastrum(diploid) 4	1.035
	CNS0095598	Silvery flower (diploied) 1	1.641
	CNS0095599	Silvery flower (diploied) 2	1.128
	CNS0095600	Silvery flower (diploied) 3	2.078
	CNS0095601	Golden flower (diploid) 1	1.760
	CNS0095602	Golden flower (diploid) 2	2.547
	CNS0095603	Golden flower (diploid) 3	3.105
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.960
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.819
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.031
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.690
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.060
	CNS0095610	Silvery flower (tetraploid) 1	1.439
	CNS0095611	Silvery flower (tetraploid) 2	1.300
	CNS0095612	Silvery flower (tetraploid) 3	0.799
	CNS0095613	Golden flower (tetraploid) 1	1.448
	CNS0095614	Golden flower (tetraploid) 2	1.155
	CNS0095615	Golden flower (tetraploid) 3	2.406
CRA001975	CRR073297	Stem 1	1.889
	CRR073298	Stem 2	1.649
	CRR073299	Stem 3	1.693
	CRR073300	Leaf 1	1.659
	CRR073301	Leaf 2	1.250
	CRR073302	Leaf 3	1.552
	CRR073303	Juvenile bud 1	2.071
	CRR073304	Juvenile bud 2	0.957
	CRR073305	Juvenile bud 3	1.903
	CRR073306	Third green 1	2.680
	CRR073307	Third green 2	1.890
	CRR073308	Third green 3	2.620
	CRR073309	Second white 1	1.352
	CRR073310	Second white 2	0.592
	CRR073311	Second white 3	1.349
	CRR073312	Silver flowering 1	0.415
	CRR073313	Silver flowering 2	0.954
	CRR073314	Silver flowering 3	1.266
	CRR073315	Gold flowering 1	14.368
	CRR073316	Gold flowering 2	17.262
	CRR073317	Gold flowering 3	4.593
	CRR073318	Tawny withering 1	5.013
	CRR073319	Tawny withering 2	5.071
	CRR073320	Tawny withering 3	7.718