Gene detail

Detail information of GWHGAAZE012950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007033534.1	0	Kinase superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	2E-64	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|A0A061EHG2\|A0A061EHG2_THECC	0	Kinase superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY04460.1}
TAIR10	AT3G08760.1	7E-167	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94152589	94155017	-
GWHAAZE00000003	mRNA	94152589	94155017	-
GWHAAZE00000003	exon	94152589	94153209	-
GWHAAZE00000003	exon	94153663	94153782	-
GWHAAZE00000003	exon	94153992	94154249	-
GWHAAZE00000003	exon	94154373	94155017	-
GWHAAZE00000003	CDS	94154373	94155017	-
GWHAAZE00000003	CDS	94153992	94154249	-
GWHAAZE00000003	CDS	94153663	94153782	-
GWHAAZE00000003	CDS	94152589	94153209	-

Transcript Sequence
>GWHTAAZE012964 ATGGGATGTTTCACAGTTCTAAAGAGTAAGAAGAAAAAATCTGAGCAGAGCATTTACATAAAACGCATCAACCCTCAAGAATCTACGCCGACTACACTTCCCGAACCCCAAGTTCAAACCCGTTCGTTACAATCTGCACCGCCGAGTTTTAGGACAAGGGCAAAACAGGTTCAGCCAAATAACAGAGTAACCAACAATAGAACAAGGGCTTTATCTGCGCCTTCAAGCCTTAATAATGCAGCCGAAGAGGATACCCTATCTTCAGTTGAATATGAGGAACAAGAAGAGCCCAAGAATAGGTATGGATCAGTGAAAGAACACCGGTCCCCAAGTCCACAGCCTCTTCCTCTTCCGTCACCTCAAAGTGCTGGTGTTTTGAAGACTTTGGGAAGCTTCAAGGTGGGGAACTCAAGTGGCCCACTCAATGCTTCGGGCCCACTGCCACTGCCTCCAACGCCACCTCCTTTGGGAACACTACGGAGCTTTTCGTATGACGAAATTGCATCTGCCTGCCATAATTTTTCTCCTGAGCGATGTATGTCTGAAGGTCTTTCTTCTGTGATATATAGAGCTTCCTTTGGGGATGATACTTCTGGTCCCAAAAAACTCGAAGCCACTGTTACTCGCCTTCATCCATCCACCCAGGGTTTGAAAGAATTTGTAAATGAAGTGAACACACTGGCATCTTTGCAGCATCCATACCTGTGTAAGTTGCTTGGTTTCCATGCACGTGAGGGATCAGAACGAAGGATGCTGGTTTACGAGAGGTTGTTCCATGGAAGCTTAGACCGGCTTTTGTATGGTAGATGCGACGGTCCTCCTATTGATTGGAATGCCAGAATGAAAGTTGCTTTATGTGCTGCACAAGGCCTCACCTTCTTACACGAGGAAGGTCCTTTCCAGGCAATGTTCCATGAATTTTCGACTGGAAATATACAGATTGATAAAGATTTCAGTGCAAAGCTTTCGGGGTATGGTTGCATAGGCCCAATTTCAGAGACAGACATCTCTAATAGTTCAGTTGGAACGGGAAATCTTTCTGTGGAGACGTTGGAGAGAGGATTGCTAACCCCAAAGAGCAATGTTTGGAGTTTCGGAATTGTGCTTCTTGAACTGCTTACGGGCAGGAAGAACCTCGACAACCGCCATCCCAAGGAAGAACGGAACTTAGTGAAGTGGAGTCGACCCTACTTGGCTGATGATAGTAGACTATCACTCATCATGGATCCCCAGCTAAAAGGTCGGTTCCCAGCCAAAGCAGCTCGAATGGTGGCCGATATAGCTCAAAGATGCCTTCAAATGGAACCATCAGAAAGACCCACTATGAGAACCATCGTGGAGCATCTCAAAATCATACAAGACATGAGATTCACGTCTCGGTTCCCGCTCCAAGAGCCAGGTTCAGTCAGTGGCAAGAATATGTCAAGATCACCTAGCCTTGATGGGATTGTTACACCAGCCCCTAGGTTAAGTTTCTCCCCGTCACCACCAACAAACAGAGTGGCTATTTCTCCAACAAGGCCGCTCTCATTGCCTTTGACTCTTCCTCCCCGTTCTTGTTCATCGTTGGAGCAAATTGATCGACAGGAAAGTAGGAAATCTTCGTCTTCGATGCCCCGACGGTCCAGCGTTGAAGGATTTTGA

Network for GWHGAAZE012950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	181	449	2.90E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.963
	SRR3591706	second leaf	11.036
	SRR3591707	mature leaf	10.132
	SRR3591708	Shoot apex	30.466
	SRR3591709	Stem	42.624
	SRR3591710	White floral bud	13.980
	SRR3591711	White flower	20.881
	SRR3591712	Green floral bud	15.712
	SRR3591713	Yellow flower	19.458
SRP173429	SRR8316895	Juvenile bud stage	13.511
	SRR8316896	Juvenile bud stage	14.303
	SRR8316897	Juvenile bud stage	10.080
	SRR8316894	Third green stage	6.782
	SRR8316900	Third green stage	10.509
	SRR8316901	Third green stage	12.874
	SRR8316898	Complete white stage	2.442
	SRR8316899	Complete white stage	19.186
	SRR8316903	Complete white stage	7.301
	SRR8316902	Silver flowering stage	3.579
	SRR8316904	Silver flowering stage	4.976
	SRR8316905	Silver flowering stage	2.312
	SRR8316906	Gold flowering stage	12.286
	SRR8316907	Gold flowering stage	8.810
	SRR8316908	Gold flowering stage	16.863
SRP132670	SRR6706286	Control	12.243
	SRR6706287	Light intensity 50%	12.644
	SRR6706288	Light intensity 20%	11.570
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.238
	CNS0095593	Slightly white alabastrum(diploid) 2	14.214
	CNS0095594	Slightly white alabastrum(diploid) 3	12.926
	CNS0095595	Whole white alabastrum(diploid) 2	8.219
	CNS0095596	Whole white alabastrum(diploid) 3	5.376
	CNS0095597	Whole white alabastrum(diploid) 4	5.338
	CNS0095598	Silvery flower (diploied) 1	15.393
	CNS0095599	Silvery flower (diploied) 2	8.059
	CNS0095600	Silvery flower (diploied) 3	11.885
	CNS0095601	Golden flower (diploid) 1	10.997
	CNS0095602	Golden flower (diploid) 2	16.099
	CNS0095603	Golden flower (diploid) 3	15.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.428
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.884
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.224
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.358
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.715
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.080
	CNS0095610	Silvery flower (tetraploid) 1	8.364
	CNS0095611	Silvery flower (tetraploid) 2	10.686
	CNS0095612	Silvery flower (tetraploid) 3	15.376
	CNS0095613	Golden flower (tetraploid) 1	6.550
	CNS0095614	Golden flower (tetraploid) 2	9.053
	CNS0095615	Golden flower (tetraploid) 3	5.188
CRA001975	CRR073297	Stem 1	35.961
	CRR073298	Stem 2	31.432
	CRR073299	Stem 3	37.470
	CRR073300	Leaf 1	35.238
	CRR073301	Leaf 2	37.146
	CRR073302	Leaf 3	21.977
	CRR073303	Juvenile bud 1	32.498
	CRR073304	Juvenile bud 2	28.516
	CRR073305	Juvenile bud 3	53.595
	CRR073306	Third green 1	11.275
	CRR073307	Third green 2	9.880
	CRR073308	Third green 3	14.803
	CRR073309	Second white 1	17.434
	CRR073310	Second white 2	13.443
	CRR073311	Second white 3	13.563
	CRR073312	Silver flowering 1	39.686
	CRR073313	Silver flowering 2	42.308
	CRR073314	Silver flowering 3	26.471
	CRR073315	Gold flowering 1	26.966
	CRR073316	Gold flowering 2	28.725
	CRR073317	Gold flowering 3	35.930
	CRR073318	Tawny withering 1	38.772
	CRR073319	Tawny withering 2	40.703
	CRR073320	Tawny withering 3	38.251