Gene detail

Detail information of GWHGAAZE012934

Functional Annotation

Database	Orthologs	Annotation
Nr	KDO64166.1	hypothetical protein CISIN_1g006747mg [Citrus sinensis]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|A0A067FLY5\|A0A067FLY5_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO64166.1}
TAIR10	AT5G58300.2	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93958915	93961216	+
GWHAAZE00000003	mRNA	93958915	93961216	+
GWHAAZE00000003	exon	93958915	93960178	+
GWHAAZE00000003	exon	93960594	93961216	+
GWHAAZE00000003	CDS	93958915	93960178	+
GWHAAZE00000003	CDS	93960594	93961216	+

Transcript Sequence
>GWHTAAZE012948 ATGAAGCTGCACTCTTTAGTAACTCTCCCTTTCCTCTTCCTCCTTTTTCTCCTCCCTATTACTGGTGCTGATCTGAATTCAGACATAAAATCGCTCCTTGACTTTGCTACTGCGGTGCCCCATGGCCGAAAGCTTAACTGGAGTGACGATTCTCCGGTGTGCACCTCATGGGTTGGCATCACTTGCACCATTGATGGTACTCATGTACTTACTCTCCGACTACCTGGTGCTGAGCTCTTTGGTACAGTGCCCCCAAACACCCTAGGAAATCTTAATTACCTAACCATCCTCAGCCTTCGAGCCAATGGTCTAAATGGGACTCTACCATCTGATATCCTCTCCCTTCCTTCCCTGCGCTATATAAACCTCCAAGATAACAGTTTCTCTGGCGAAATTCCTCCCTATTTTTCCTCCCAACTTGAATTAATTGATCTTTCTTTCAATTCCTTCACTGGCAGCATTCCACCCACAATTCAAAACTTGACACTCCTCTCTAATCTAAGGCTCGAAAACAATTCCCTTATTGGTTCTATCCCTGATCTCGACCTTCCAATGCTTAAGAACTTGAATTTGAGTAATAACCACCTTAGTGGCTCAATTCCATCTCCCCTTCAAGATTTTGATGCCTCCGCTTTCGAAGGAAACTCTATGTTATGCGGGCTACCCCTTAGCCAATGCACTTCTATCAACCCGTCACCCTCTCCTTTGCCCAAAATCCATCGAAGACGTAAAACCAATAAGAAATTAAGCTTGGTGGCTATTATTTCCATCGGAATTGGGGCCTCTGCAATGCTTTTCATTCTTGTTACGATAACAGTGATGTGTTATTTGAAGAAAAGAGACTATATAGGAAGCAATGTACTAAAAGGAAAGGCTGCTGGCGGTGGTGGAAAGAGTGAGATGACTAAAGAGGACTTTGAAAGCGGGGTGCAAGAGGCTGAGAAGAACAGACTGGTGTTCTCTGAAGGGTGTACTTACAATTTTGACCTTGAGGACTTACTTAGGGCATCTGCTGAAGTTTTGGGAAAGGGAACTTATGGAAGAACCTATAAAGCTATCTTAGAGGATGGAACAACTGTGGTTGTGAAGCGGCTCAAAGAAGCGGCAGTTAGCACGAGAGAGTTTGAAGAATTCATGGAAATTGTGGGTATGTTAGGGAAGCACCCGAATGTTATCCCTCCTCGCGCTTATTACCATTCCAAGGATGAGAAACTCCTCATTTACGATTATGTTAGTTTTGGCAGCTTGTCCTCTCTGTTGCATGAAAACAGGTACTTGGGAAGAACACTTGATTGGGAATCAAGAGTGAAGATTTGTCTTGGATCAGCTAGAGGAATCGCTCATATCCATTTAGCCAGTGGTGGGAAATTAACACACGGAAACATAAAGTCCTCAAACATCCTCCTGACCCAAGAACTCAACGGATGCGTTTCAGATTTTGGCCTAACTCGTCTCATGGGACCCCCAATTACACCATCAAGAAATGGAGGCTATCATGCACCGGAGTTGTTTGAAACCAAGAGAGCCACACAAGAATCAGATGTATACAGCTTCGGTGTTCTTTTGCTAGAGATGCTGACAGGGAAAGCGCCAGTCCAGTCAGCAGGAGGGGGAGATGACGTGGCAGATCTGCCAAGGTGGGTCCAGTCAGTGATAAGGGAGGAGTGGACAGCAGAGGTGTTTGATGTGGAGTTGATTAAGTATGAAAACATTGAAGAAGAGATGGTGGAGTTGCTCCAGATTGCAATGGCTTGTGTGGGAATGGTGGCCGGAAAGAGGCCTAAGATGGATGAAATTGTTAGAAGAATTGAAGAAATGCGGCCATCATTATCCGAGGATGATAAGTCTAGAAGCCCGGTTACTCCCACACCTCGAAGTGGATCATAG

Network for GWHGAAZE012934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	62	1.60E-06
PF00560.34	LRR_1	117	137	1.3
PF00560.34	LRR_1	140	161	0.46
PF00560.34	LRR_1	186	205	1.6
PF07714.18	PK_Tyr_Ser-Thr	339	602	2.80E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.760
	SRR3591706	second leaf	0.316
	SRR3591707	mature leaf	1.077
	SRR3591708	Shoot apex	1.112
	SRR3591709	Stem	1.021
	SRR3591710	White floral bud	0.432
	SRR3591711	White flower	0.701
	SRR3591712	Green floral bud	0.509
	SRR3591713	Yellow flower	0.059
SRP173429	SRR8316895	Juvenile bud stage	0.117
	SRR8316896	Juvenile bud stage	0.339
	SRR8316897	Juvenile bud stage	0.191
	SRR8316894	Third green stage	0.158
	SRR8316900	Third green stage	0.228
	SRR8316901	Third green stage	0.074
	SRR8316898	Complete white stage	0.044
	SRR8316899	Complete white stage	0.216
	SRR8316903	Complete white stage	0.226
	SRR8316902	Silver flowering stage	0.039
	SRR8316904	Silver flowering stage	0.270
	SRR8316905	Silver flowering stage	0.046
	SRR8316906	Gold flowering stage	0.671
	SRR8316907	Gold flowering stage	0.301
	SRR8316908	Gold flowering stage	1.821
SRP132670	SRR6706286	Control	0.550
	SRR6706287	Light intensity 50%	0.245
	SRR6706288	Light intensity 20%	0.227
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.395
	CNS0095593	Slightly white alabastrum(diploid) 2	0.123
	CNS0095594	Slightly white alabastrum(diploid) 3	0.099
	CNS0095595	Whole white alabastrum(diploid) 2	0.105
	CNS0095596	Whole white alabastrum(diploid) 3	0.038
	CNS0095597	Whole white alabastrum(diploid) 4	0.154
	CNS0095598	Silvery flower (diploied) 1	0.319
	CNS0095599	Silvery flower (diploied) 2	0.166
	CNS0095600	Silvery flower (diploied) 3	0.115
	CNS0095601	Golden flower (diploid) 1	0.129
	CNS0095602	Golden flower (diploid) 2	0.040
	CNS0095603	Golden flower (diploid) 3	0.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.148
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.534
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.192
	CNS0095610	Silvery flower (tetraploid) 1	0.372
	CNS0095611	Silvery flower (tetraploid) 2	0.205
	CNS0095612	Silvery flower (tetraploid) 3	0.970
	CNS0095613	Golden flower (tetraploid) 1	0.344
	CNS0095614	Golden flower (tetraploid) 2	1.330
	CNS0095615	Golden flower (tetraploid) 3	0.033
CRA001975	CRR073297	Stem 1	0.112
	CRR073298	Stem 2	0.260
	CRR073299	Stem 3	0.195
	CRR073300	Leaf 1	0.111
	CRR073301	Leaf 2	0.229
	CRR073302	Leaf 3	0.132
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.201
	CRR073305	Juvenile bud 3	0.134
	CRR073306	Third green 1	0.166
	CRR073307	Third green 2	0.484
	CRR073308	Third green 3	0.469
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.294
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.093
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.349
	CRR073315	Gold flowering 1	0.230
	CRR073316	Gold flowering 2	0.151
	CRR073317	Gold flowering 3	0.338
	CRR073318	Tawny withering 1	7.243
	CRR073319	Tawny withering 2	4.971
	CRR073320	Tawny withering 3	3.666