Detail information of GWHGAAZE012932


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrP85200.1PRS6B_HELAN0RecName: Full=26S protease regulatory subunit 6B homolog [Helianthus annuus]
Swissprottr|P85200|PRS6B_HELAN026S protease regulatory subunit 6B homolog {ECO:0000250|UniProtKB:P54778}
trEMBLtr|B9SCE5|B9SCE5_RICCO026S protease regulatory subunit 6b, putative {ECO:0000313|EMBL:EEF38699.1}
TAIR10AT5G58290.10regulatory particle triple-A ATPase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9394084593947498+
GWHAAZE00000003mRNA9394084593947498+
GWHAAZE00000003exon9394084593941189+
GWHAAZE00000003exon9394420393944433+
GWHAAZE00000003exon9394464193944799+
GWHAAZE00000003exon9394501493945166+
GWHAAZE00000003exon9394531093945393+
GWHAAZE00000003exon9394736493947498+
GWHAAZE00000003CDS9394084593941189+
GWHAAZE00000003CDS9394420393944433+
GWHAAZE00000003CDS9394464193944799+
GWHAAZE00000003CDS9394501493945166+
GWHAAZE00000003CDS9394531093945393+
GWHAAZE00000003CDS9394736493947498+
Transcript Sequence

Network for GWHGAAZE012932

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0060map03050 Proteasome
GO:0030163 protein catabolic process GOslim:biological_process
GO:0005737 cytoplasm GOslim:cellular_component
GO:0016787 hydrolase activity GOslim:molecular_function
GO:0005839 proteasome core complex GOslim:cellular_component
GO:0051603 proteolysis involved in cellular protein catabolic process GOslim:biological_process
GO:0004298 threonine-type endopeptidase activity GOslim:molecular_function
GO:0005524 ATP binding GOslim:molecular_function
GO:0019773 proteasome core complex, alpha-subunit complex GOslim:cellular_component
GO:0004175 endopeptidase activity GOslim:molecular_function
GO:0006511 ubiquitin-dependent protein catabolic process GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16450.6Prot_ATP_ID_OB39943.40E-10
PF00004.30AAA1522852.00E-44
PF17862.2AAA_lid_33083505.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03063PSMC4, RPT3 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0030163biological_processprotein catabolic process
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf175.180
SRR3591706second leaf83.022
SRR3591707mature leaf65.845
SRR3591708Shoot apex114.281
SRR3591709Stem138.099
SRR3591710White floral bud127.721
SRR3591711White flower226.618
SRR3591712Green floral bud148.337
SRR3591713Yellow flower197.231
SRP173429 SRR8316895Juvenile bud stage 93.821
SRR8316896Juvenile bud stage 141.449
SRR8316897Juvenile bud stage 62.598
SRR8316894Third green stage 56.858
SRR8316900Third green stage 185.050
SRR8316901Third green stage 167.170
SRR8316898Complete white stage 79.525
SRR8316899Complete white stage 206.657
SRR8316903Complete white stage 103.744
SRR8316902Silver flowering stage80.027
SRR8316904Silver flowering stage92.553
SRR8316905Silver flowering stage47.247
SRR8316906Gold flowering stage 223.020
SRR8316907Gold flowering stage 193.119
SRR8316908Gold flowering stage 206.584
SRP132670SRR6706286Control169.771
SRR6706287Light intensity 50%169.951
SRR6706288Light intensity 20%190.903
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1111.976
CNS0095593Slightly white alabastrum(diploid) 2124.557
CNS0095594Slightly white alabastrum(diploid) 3108.180
CNS0095595Whole white alabastrum(diploid) 2110.081
CNS0095596Whole white alabastrum(diploid) 3109.461
CNS0095597Whole white alabastrum(diploid) 493.250
CNS0095598Silvery flower (diploied) 185.020
CNS0095599Silvery flower (diploied) 292.245
CNS0095600Silvery flower (diploied) 3171.960
CNS0095601Golden flower (diploid) 184.994
CNS0095602Golden flower (diploid) 2158.316
CNS0095603Golden flower (diploid) 3145.187
CNS0095604Slightly white alabastrum(tetraploid) 1132.986
CNS0095605Slightly white alabastrum(tetraploid) 2114.291
CNS0095606Slightly white alabastrum(tetraploid) 3178.436
CNS0095607Whole white alabastrum(tetraploid) 186.255
CNS0095608Whole white alabastrum(tetraploid) 276.745
CNS0095609Whole white alabastrum(tetraploid) 3150.952
CNS0095610Silvery flower (tetraploid) 1196.531
CNS0095611Silvery flower (tetraploid) 2193.342
CNS0095612Silvery flower (tetraploid) 3151.161
CNS0095613Golden flower (tetraploid) 1169.382
CNS0095614Golden flower (tetraploid) 2186.100
CNS0095615Golden flower (tetraploid) 3234.323
CRA001975CRR073297Stem 1155.913
CRR073298Stem 2155.268
CRR073299Stem 3190.705
CRR073300Leaf 1188.427
CRR073301Leaf 2185.853
CRR073302Leaf 3222.675
CRR073303Juvenile bud 1255.914
CRR073304Juvenile bud 2230.311
CRR073305Juvenile bud 3211.588
CRR073306Third green 1129.128
CRR073307Third green 2107.030
CRR073308Third green 3118.568
CRR073309Second white 1203.992
CRR073310Second white 2187.087
CRR073311Second white 3139.612
CRR073312Silver flowering 1119.151
CRR073313Silver flowering 2127.165
CRR073314Silver flowering 3108.454
CRR073315Gold flowering 182.619
CRR073316Gold flowering 2105.616
CRR073317Gold flowering 387.288
CRR073318Tawny withering 1183.157
CRR073319Tawny withering 2153.423
CRR073320Tawny withering 3196.068