Gene detail

Detail information of GWHGAAZE012919

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002315330.1	4.98758E-78	glycine-rich RNA-binding family protein [Populus trichocarpa]
Swissprot	tr\|O22703\|RZ1B_ARATH	2E-56	Glycine-rich RNA-binding protein RZ1B {ECO:0000305}
trEMBL	tr\|B9HUL0\|B9HUL0_POPTR	2E-78	Glycine-rich RNA-binding family protein {ECO:0000313\|EMBL:EEF01501.1}
TAIR10	AT1G60650.2	8E-29	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93771143	93780836	+
GWHAAZE00000003	mRNA	93771143	93780836	+
GWHAAZE00000003	exon	93771143	93771262	+
GWHAAZE00000003	exon	93775365	93775597	+
GWHAAZE00000003	exon	93775721	93775873	+
GWHAAZE00000003	exon	93780255	93780377	+
GWHAAZE00000003	exon	93780596	93780836	+
GWHAAZE00000003	CDS	93771143	93771262	+
GWHAAZE00000003	CDS	93775365	93775597	+
GWHAAZE00000003	CDS	93775721	93775873	+
GWHAAZE00000003	CDS	93780255	93780377	+
GWHAAZE00000003	CDS	93780596	93780836	+

Transcript Sequence
>GWHTAAZE012933 ATGGCTGGGAAGGATCGTGATGAAGATTACAGAATCTTTGTGGGAGGGTTGTCATGGGAAGTCAGCGAGCGTCAACTCGAAGACGCCTTTGCTCGTTACGGCAAAATTCTCGACGCCCAGGTCATGGTGGAAAGAGATACAGGGCGTCCTCGTGGATTTGGGTTTTTGACATTTGCAGATCGTCGAGGAATGGATGAAGCAATCAGGGAAATGGATGGTCGGGAGCTTGGTGATCGGGCCATCTCGGTCAACAGGGCGAAACCAAAGAACGGAGGCGAGGATCTAGGCCATGGTTATGGTAGTGGGGGTTACTCCTCCGGTGGCAGGGGGAGCAGCTATGGGGGAGGAGATAGGTTAGGTGGGGTTGGCGGTGGATGTGGGGACCGCTATGCAGATCGGGACCGCTTCTTTGATGATAGATATGACAGGGGAGGGCACTATGGTGACAGAGACCGCTATGATAGCAGAGACAAATATGGGGGCCGTGATCGCTATGTTAGTGACAGCCCACCACCCACAGCTGCTGCCACCGGCTGCCCTCTGCTGGACCTCCAGAGACCTCCGTCAGAGTTCTGGCAGTGGTTACTAGAGGACTGGTGGAGGGCAGGGGTGGCAACAACTGTCAGGCGGTACCTGCCCAGTGGAGATCGCTTTGGTGGTGACAGGTATGGTGGTTCGGACCGTTACCCAGCAAATGGGTATGGCAAGGACAGAGACTACGAGCGGGATGTGGGCCCGGGACGGGTTAATGACAGGTATGGAGGGGGAGGGCCCGTACGTTTCGAAGGAAAAGGTCACAGGGACAGAGCCGGTCCTTATGACCGCCCCAAGCGGGGAGCTGGGCGTCCATCTTCCTTCGACCGCTATTGA

Network for GWHGAAZE012919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	12	81	1.70E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12885	RBMX, HNRNPG	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.057
	SRR3591706	second leaf	28.876
	SRR3591707	mature leaf	33.875
	SRR3591708	Shoot apex	58.438
	SRR3591709	Stem	43.220
	SRR3591710	White floral bud	48.045
	SRR3591711	White flower	55.660
	SRR3591712	Green floral bud	46.445
	SRR3591713	Yellow flower	38.078
SRP173429	SRR8316895	Juvenile bud stage	29.722
	SRR8316896	Juvenile bud stage	39.228
	SRR8316897	Juvenile bud stage	17.686
	SRR8316894	Third green stage	15.094
	SRR8316900	Third green stage	39.926
	SRR8316901	Third green stage	47.350
	SRR8316898	Complete white stage	13.050
	SRR8316899	Complete white stage	49.102
	SRR8316903	Complete white stage	33.085
	SRR8316902	Silver flowering stage	24.155
	SRR8316904	Silver flowering stage	22.700
	SRR8316905	Silver flowering stage	14.943
	SRR8316906	Gold flowering stage	48.101
	SRR8316907	Gold flowering stage	63.253
	SRR8316908	Gold flowering stage	54.752
SRP132670	SRR6706286	Control	75.117
	SRR6706287	Light intensity 50%	75.084
	SRR6706288	Light intensity 20%	70.246
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	68.780
	CNS0095593	Slightly white alabastrum(diploid) 2	64.154
	CNS0095594	Slightly white alabastrum(diploid) 3	70.175
	CNS0095595	Whole white alabastrum(diploid) 2	45.252
	CNS0095596	Whole white alabastrum(diploid) 3	37.774
	CNS0095597	Whole white alabastrum(diploid) 4	41.516
	CNS0095598	Silvery flower (diploied) 1	57.881
	CNS0095599	Silvery flower (diploied) 2	52.302
	CNS0095600	Silvery flower (diploied) 3	35.533
	CNS0095601	Golden flower (diploid) 1	57.219
	CNS0095602	Golden flower (diploid) 2	35.595
	CNS0095603	Golden flower (diploid) 3	34.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.953
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.410
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.404
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.676
	CNS0095610	Silvery flower (tetraploid) 1	57.196
	CNS0095611	Silvery flower (tetraploid) 2	30.895
	CNS0095612	Silvery flower (tetraploid) 3	35.142
	CNS0095613	Golden flower (tetraploid) 1	55.310
	CNS0095614	Golden flower (tetraploid) 2	51.485
	CNS0095615	Golden flower (tetraploid) 3	31.233
CRA001975	CRR073297	Stem 1	36.074
	CRR073298	Stem 2	39.394
	CRR073299	Stem 3	42.615
	CRR073300	Leaf 1	38.701
	CRR073301	Leaf 2	40.406
	CRR073302	Leaf 3	31.099
	CRR073303	Juvenile bud 1	32.323
	CRR073304	Juvenile bud 2	21.580
	CRR073305	Juvenile bud 3	31.552
	CRR073306	Third green 1	16.963
	CRR073307	Third green 2	18.236
	CRR073308	Third green 3	13.986
	CRR073309	Second white 1	9.655
	CRR073310	Second white 2	9.123
	CRR073311	Second white 3	7.250
	CRR073312	Silver flowering 1	5.870
	CRR073313	Silver flowering 2	11.155
	CRR073314	Silver flowering 3	8.423
	CRR073315	Gold flowering 1	18.433
	CRR073316	Gold flowering 2	20.457
	CRR073317	Gold flowering 3	19.547
	CRR073318	Tawny withering 1	31.468
	CRR073319	Tawny withering 2	27.545
	CRR073320	Tawny withering 3	27.526