Gene detail

Detail information of GWHGAAZE012899

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI40184.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8GYE0\|PHF1_ARATH	6E-140	SEC12-like protein 1
trEMBL	tr\|D7UBR9\|D7UBR9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40184.3}
TAIR10	AT3G52190.1	3E-103	phosphate transporter traffic facilitator1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93465422	93473732	+
GWHAAZE00000003	mRNA	93465422	93473732	+
GWHAAZE00000003	exon	93465422	93465522	+
GWHAAZE00000003	exon	93467346	93467478	+
GWHAAZE00000003	exon	93467579	93467670	+
GWHAAZE00000003	exon	93469317	93469416	+
GWHAAZE00000003	exon	93469496	93469568	+
GWHAAZE00000003	exon	93469679	93469799	+
GWHAAZE00000003	exon	93471849	93471968	+
GWHAAZE00000003	exon	93473127	93473215	+
GWHAAZE00000003	exon	93473536	93473732	+
GWHAAZE00000003	CDS	93465422	93465522	+
GWHAAZE00000003	CDS	93467346	93467478	+
GWHAAZE00000003	CDS	93467579	93467670	+
GWHAAZE00000003	CDS	93469317	93469416	+
GWHAAZE00000003	CDS	93469496	93469568	+
GWHAAZE00000003	CDS	93469679	93469799	+
GWHAAZE00000003	CDS	93471849	93471968	+
GWHAAZE00000003	CDS	93473127	93473215	+
GWHAAZE00000003	CDS	93473536	93473732	+

Transcript Sequence
>GWHTAAZE012913 GCTACTCACGTGTTTGAAGAAGAAGAGGGAGATCCCGTGAACCTAGCGGTACACCCTAGCGGGGATGATATTGTTTGCTCTACGGCCTCTGGTGGCTGCAAATTGATTGAGTTGTATGGCCGAGAAGCAAATTTAAAGCTATTGGCCAAAGACTTACTTCCTCTCCAAGGTGTAGGTCCACAAAAATGCCTTGCTTTTAGCGTTGATGGATCTAGATTCGCTACTGGTGGGGTGGATGGGCATCTCAGGATCTTTGAATGGCCAAGCATGCGCATCATTTTAGATGAACCAAGAGCACACAAATCGTTCCAGGATATGGATTTTAGCCTTGACTCCGAGTTCTTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATTTGGAATACAAATGATGGTGTTCCATTGACTTCTTTGACTCGCAATTCAGATGAAAAGATTGAACTATGTAGGTTTTCTAAAGATGGGACAAAACCATTCTTATTCTGCACTATTCAGAAAGGTAATAAAGCACTCACTGCTGTTTGGGACATGAGTACATGGAAGAAAATTGGCCACAAGAGACTACTTAGAAAACCTGCATCAATAATGTCTGTCAGTCTGGATGGGAAATATCTAGCTCTGGGTAGCAAAGATGGTGATGTATGTGTAGTTGAAGTGAAAAAAATGGAGGTTTGCCACTGGAGTAAGAGGCTTCACTTGGGTTCTTCCATTGAATCTCTTGAATTCTGTCCCAGTGAAAGAGAAGAACACCTGACCAAACAAAGACCAACCGGGACTGGACAATCTGGACTTGACGGCTCTCGGTTCTTGAGCAAGCTCATCCACTGTGAGTGGCAGATCTACGTAGTGCTTTTGGGACTCTTTTTGGCATCGGCTATTGCATTCTACATATTCTTCCAGAATTCTGATTCATTCTGGAAGCTTCCAATTGCCAGAGATCAAACTGCGCAGCCAAAGATCGAAGCCATTTTAGGGGATCCGCAATCTGAGGATAAATGGGGAGCTTTTGGACCGTTAGATATGTAA

Network for GWHGAAZE012899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	63	85	0.0075
PF00400.33	WD40	97	128	0.0021

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14003	PREB, SEC12	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.332
	SRR3591706	second leaf	17.696
	SRR3591707	mature leaf	35.194
	SRR3591708	Shoot apex	25.889
	SRR3591709	Stem	51.966
	SRR3591710	White floral bud	42.134
	SRR3591711	White flower	53.191
	SRR3591712	Green floral bud	29.754
	SRR3591713	Yellow flower	60.802
SRP173429	SRR8316895	Juvenile bud stage	27.963
	SRR8316896	Juvenile bud stage	35.717
	SRR8316897	Juvenile bud stage	22.977
	SRR8316894	Third green stage	13.089
	SRR8316900	Third green stage	26.692
	SRR8316901	Third green stage	34.183
	SRR8316898	Complete white stage	19.389
	SRR8316899	Complete white stage	56.032
	SRR8316903	Complete white stage	37.882
	SRR8316902	Silver flowering stage	29.890
	SRR8316904	Silver flowering stage	39.263
	SRR8316905	Silver flowering stage	20.050
	SRR8316906	Gold flowering stage	63.398
	SRR8316907	Gold flowering stage	59.208
	SRR8316908	Gold flowering stage	59.158
SRP132670	SRR6706286	Control	25.033
	SRR6706287	Light intensity 50%	24.293
	SRR6706288	Light intensity 20%	25.578
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.172
	CNS0095593	Slightly white alabastrum(diploid) 2	40.332
	CNS0095594	Slightly white alabastrum(diploid) 3	50.097
	CNS0095595	Whole white alabastrum(diploid) 2	29.427
	CNS0095596	Whole white alabastrum(diploid) 3	19.022
	CNS0095597	Whole white alabastrum(diploid) 4	29.164
	CNS0095598	Silvery flower (diploied) 1	42.634
	CNS0095599	Silvery flower (diploied) 2	31.394
	CNS0095600	Silvery flower (diploied) 3	58.730
	CNS0095601	Golden flower (diploid) 1	42.221
	CNS0095602	Golden flower (diploid) 2	57.554
	CNS0095603	Golden flower (diploid) 3	53.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.801
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.592
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.915
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.734
	CNS0095610	Silvery flower (tetraploid) 1	45.401
	CNS0095611	Silvery flower (tetraploid) 2	46.649
	CNS0095612	Silvery flower (tetraploid) 3	37.107
	CNS0095613	Golden flower (tetraploid) 1	46.013
	CNS0095614	Golden flower (tetraploid) 2	42.903
	CNS0095615	Golden flower (tetraploid) 3	66.878
CRA001975	CRR073297	Stem 1	26.081
	CRR073298	Stem 2	24.502
	CRR073299	Stem 3	24.071
	CRR073300	Leaf 1	25.594
	CRR073301	Leaf 2	33.299
	CRR073302	Leaf 3	29.788
	CRR073303	Juvenile bud 1	26.446
	CRR073304	Juvenile bud 2	26.074
	CRR073305	Juvenile bud 3	30.629
	CRR073306	Third green 1	25.368
	CRR073307	Third green 2	25.755
	CRR073308	Third green 3	23.428
	CRR073309	Second white 1	33.003
	CRR073310	Second white 2	27.752
	CRR073311	Second white 3	25.588
	CRR073312	Silver flowering 1	29.909
	CRR073313	Silver flowering 2	32.258
	CRR073314	Silver flowering 3	23.734
	CRR073315	Gold flowering 1	24.199
	CRR073316	Gold flowering 2	34.575
	CRR073317	Gold flowering 3	22.906
	CRR073318	Tawny withering 1	28.572
	CRR073319	Tawny withering 2	35.308
	CRR073320	Tawny withering 3	32.637