Gene detail

Detail information of GWHGAAZE012889

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006436677.1	hypothetical protein CICLE_v10031182mg [Citrus clementina]
Swissprot	tr\|Q05609\|CTR1_ARATH	Serine/threonine-protein kinase CTR1
trEMBL	tr\|V4T9I7\|V4T9I7_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR49917.1}
TAIR10	AT5G03730.2	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93254182	93277125	+
GWHAAZE00000003	mRNA	93254182	93277125	+
GWHAAZE00000003	exon	93254182	93254388	+
GWHAAZE00000003	exon	93256518	93256819	+
GWHAAZE00000003	exon	93257303	93257444	+
GWHAAZE00000003	exon	93258425	93258528	+
GWHAAZE00000003	exon	93259952	93260160	+
GWHAAZE00000003	exon	93260813	93260935	+
GWHAAZE00000003	exon	93266083	93266217	+
GWHAAZE00000003	exon	93266357	93266448	+
GWHAAZE00000003	exon	93268922	93268990	+
GWHAAZE00000003	exon	93269415	93269515	+
GWHAAZE00000003	exon	93270005	93270089	+
GWHAAZE00000003	exon	93274251	93274349	+
GWHAAZE00000003	exon	93274753	93274821	+
GWHAAZE00000003	exon	93274941	93275072	+
GWHAAZE00000003	exon	93275472	93275566	+
GWHAAZE00000003	exon	93276591	93277125	+
GWHAAZE00000003	CDS	93254182	93254388	+
GWHAAZE00000003	CDS	93256518	93256819	+
GWHAAZE00000003	CDS	93257303	93257444	+
GWHAAZE00000003	CDS	93258425	93258528	+
GWHAAZE00000003	CDS	93259952	93260160	+
GWHAAZE00000003	CDS	93260813	93260935	+
GWHAAZE00000003	CDS	93266083	93266217	+
GWHAAZE00000003	CDS	93266357	93266448	+
GWHAAZE00000003	CDS	93268922	93268990	+
GWHAAZE00000003	CDS	93269415	93269515	+
GWHAAZE00000003	CDS	93270005	93270089	+
GWHAAZE00000003	CDS	93274251	93274349	+
GWHAAZE00000003	CDS	93274753	93274821	+
GWHAAZE00000003	CDS	93274941	93275072	+
GWHAAZE00000003	CDS	93275472	93275566	+
GWHAAZE00000003	CDS	93276591	93276717	+
GWHAAZE00000003	three_prime_UTR	93276718	93277125	+

Transcript Sequence
>GWHTAAZE012903 ATGGCTCTAACGGTGAGGAATGAATGGGGAACGACGTCGTACAAGAGCTGGGCTCAGCAAACTGAGGAGAGCTACCAGTTACAGCTGGCGTTGGCGCTTCGGCTATCCTCGGAGGCGGCTAGTGCCGATGATCCTAATTTGTTATTGCACTCCCGCATTGATGACCGGACGACGACCTCCCCGGAGGTCTTGTCACATCGATTTTGGGTGAATGGCAGCCTGTCTTACTATGACAAAGTTCCAGATGGGTTTTACTTAATACATGGGATGGATCCATATGTATGGTCCTTGAGCACTGATCTCCAAGAAACCGGCCGAGTCCCATCCTATGATTCATTGAAAGCTGTTGATCCTTGTGATGATTTTCCAATTGAAGCAATTTTGTTTGATAAATCTTGGGATCCTGGTTTAAGGGAACTACAAAATAAGGTACTAAGCTTTTCTAGTAGCTGGGTTAGTGGAAAAGAGGCGGTTGGTTATCTTGCCGAGCTTGTATGTAATCACATGGGGGGGATAGCTTCTACAGAAGAATGTTTTGAAGACCAGTGGAAAGAGTGCACTAAAGTTCTCAAGGACTGTCTAGGCTCCGTTGTGCTTCCAATTGGGAGCTTATCTGTTGGGTTATGTGTTCATCGGGCACTACTATTTAAAATATTGGCTGACATAGTAAACTTACCATGTCGAATCACCAAGGGCTGTAAATATTGTGGGAGGGATTTTGCTTCCTCATGTCTTGTGCAACTTGGTCCAGACAGGGAATATTTGGTTGATCTGATTGGAATGCCAGGAGTCTTATGCCAGCCTGATTCCATGCTTAATGGAAACTCTTCCATTGTAGTTTCTTCTCCATTATGCCATCCAAAGTTTAGGGCTGTTGAAGTTGGTGAGAACTTCAGGACGATTGCCCAACTGTATTTTTCGGACATTCAGTCACTTAACATAGCATTTGATGATGCTCCTGCAGGTGCTGCTACTGATCAAGAGGATGGCACAGAATATCCTAATCCTTATCAACTGAGTCATATTTACGGGGATAACCTTGTTACTGTTTCAAGTAGCAAGCGTCAACCTTCTGAACCAGATTCAGATCTAAGGTCACATGCAGTTGATATGATGAGGTTCATGGACGTACCTAGAAGAACCAGTAGTGAACTCTCTCTTGTTGAGGAGGACCTAGACATCCCATGGAGTGATCTTGATTTAAAGGAGAAAATTGGAGCAGGTTCTTTTGGAACTGTTCACCGTGCTGAGTGGCATGGTTTGGTAAGCATCTTTTCCCCTCTATTTCTGCGGCATGGTTATGATACTTTCACGGATGTTGCAGTCAAAGTACTCATGGAGCAAGATTTTCATGTGGAGCGCTTCAGGGAATTCTTGAGTGAGGTTTCAATTATGAAATGCTTGAGGCATCCAAATATAGTACTCTTGCTAGGTGCTGTTACTCATCCTCCAAACTTGTCCATAGTTACAGAATATCTATCAAGAGGCAGCTTGTATAAACTTCTACAAATGCCTGATGCGGGAGTAATACTGGATGAAACCCGCCGACTGAATATGGCTTATGATGTGGCCCAGGGAATGAATTATCTTCATCAGCTTAAACCCCCTATTGTTCATCGAGATTTGAAGTCTCCAAACCTTTTGGTCGACGGTAGATTTACAGTAAAGGTCTGTGATTTTGGCCTTTCCCGATCAAAAGCAAACACATTTCTTTCATCCAAAACAGCTGCAGGCACTCCCGAGTGGATGGCCCCAGAAGTTCTTCGCAATGAGCCGTCAAATGAGAAATCAGATGTTTTCAGCTTTGGTGTAATATTGTGGGAACTTGCGACTCTGCAAAAGCCTTGGAGAAACTTGTATACATCACAGGTTGTGGCAGCTGTTGGATTCATGGGCAAAAGGCTTGCAATTCCCAGCCATGTCAATCCCCAATTGGCTGCGTTAATTGAAGCCTGCTGGGCTAATGATCCAATGAATCGGCCATCATTCTCTGTTATTATGGCAACATTGCAGCAATTGATCTATTATTCCACACTTCAACCCATTCGTCAAAATGCTGTACAATCGCCTAATTCAGGGGAGTATCATTAAGTTCAAAATGTTGTACAATCGCCTAATGCTGGGGGAGCATCATCAAGTTCTGCTTGTACGTATCCCCTGCTTTTTAGTACATTACTTGTACATATTTTCTCTATGCCTTAAATGCACAGCATTAACTTGTACTTAGATCATCTCCTGAAATGCTTGTATTGTTAAACAAAAAAGAAAAGGAAACAAAGGAGAATCTAGCTCGCTGCATTAGTGTTTGTTACACAGAAAATAGTGGGAAACATTAATTTTGTCTTGCAAAATAGGAGCAAATATGGTGGCCACAGATGTGAAAATGGTCTGCAAGAACTGGAATGTTGCTTGGGTTAATTGTTAACTTTATTATTTTTGCCATTTTTGGTGTGAATGAATTCTAATGAATACTTGGTAAACCAATTTTTCATTTTAAAA

Network for GWHGAAZE012889

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.7	EDR1	62	266	1.30E-71
PF07714.18	PK_Tyr_Ser-Thr	399	669	3.10E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
K14510	CTR1	MAPK signaling pathway - plant	map04016
K14510	CTR1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.215
	SRR3591706	second leaf	15.389
	SRR3591707	mature leaf	15.704
	SRR3591708	Shoot apex	20.140
	SRR3591709	Stem	25.248
	SRR3591710	White floral bud	16.454
	SRR3591711	White flower	22.943
	SRR3591712	Green floral bud	13.305
	SRR3591713	Yellow flower	21.318
SRP173429	SRR8316895	Juvenile bud stage	8.706
	SRR8316896	Juvenile bud stage	11.961
	SRR8316897	Juvenile bud stage	5.917
	SRR8316894	Third green stage	5.345
	SRR8316900	Third green stage	11.587
	SRR8316901	Third green stage	10.748
	SRR8316898	Complete white stage	6.555
	SRR8316899	Complete white stage	22.901
	SRR8316903	Complete white stage	10.397
	SRR8316902	Silver flowering stage	6.160
	SRR8316904	Silver flowering stage	6.470
	SRR8316905	Silver flowering stage	4.050
	SRR8316906	Gold flowering stage	13.424
	SRR8316907	Gold flowering stage	10.573
	SRR8316908	Gold flowering stage	12.166
SRP132670	SRR6706286	Control	11.179
	SRR6706287	Light intensity 50%	10.351
	SRR6706288	Light intensity 20%	10.460
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.589
	CNS0095593	Slightly white alabastrum(diploid) 2	7.400
	CNS0095594	Slightly white alabastrum(diploid) 3	6.521
	CNS0095595	Whole white alabastrum(diploid) 2	4.833
	CNS0095596	Whole white alabastrum(diploid) 3	4.235
	CNS0095597	Whole white alabastrum(diploid) 4	4.917
	CNS0095598	Silvery flower (diploied) 1	16.898
	CNS0095599	Silvery flower (diploied) 2	13.208
	CNS0095600	Silvery flower (diploied) 3	17.999
	CNS0095601	Golden flower (diploid) 1	12.913
	CNS0095602	Golden flower (diploid) 2	20.748
	CNS0095603	Golden flower (diploid) 3	19.908
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.568
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.021
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.536
	CNS0095610	Silvery flower (tetraploid) 1	11.775
	CNS0095611	Silvery flower (tetraploid) 2	14.055
	CNS0095612	Silvery flower (tetraploid) 3	8.907
	CNS0095613	Golden flower (tetraploid) 1	6.020
	CNS0095614	Golden flower (tetraploid) 2	10.536
	CNS0095615	Golden flower (tetraploid) 3	13.699
CRA001975	CRR073297	Stem 1	13.353
	CRR073298	Stem 2	11.601
	CRR073299	Stem 3	11.675
	CRR073300	Leaf 1	9.073
	CRR073301	Leaf 2	7.922
	CRR073302	Leaf 3	7.559
	CRR073303	Juvenile bud 1	9.271
	CRR073304	Juvenile bud 2	5.568
	CRR073305	Juvenile bud 3	8.940
	CRR073306	Third green 1	3.096
	CRR073307	Third green 2	2.289
	CRR073308	Third green 3	3.712
	CRR073309	Second white 1	4.326
	CRR073310	Second white 2	4.678
	CRR073311	Second white 3	3.703
	CRR073312	Silver flowering 1	1.871
	CRR073313	Silver flowering 2	2.585
	CRR073314	Silver flowering 3	2.526
	CRR073315	Gold flowering 1	8.176
	CRR073316	Gold flowering 2	18.325
	CRR073317	Gold flowering 3	11.301
	CRR073318	Tawny withering 1	10.734
	CRR073319	Tawny withering 2	12.047
	CRR073320	Tawny withering 3	13.188