Gene detail

Detail information of GWHGAAZE012835

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662132.1	2.70788E-66	PREDICTED: serine/threonine-protein kinase TIO [Vitis vinifera]
Swissprot	tr\|Q2QAV0\|TIO_ARATH	7E-45	Serine/threonine-protein kinase TIO
trEMBL	tr\|B9S1Z3\|B9S1Z3_RICCO	3E-64	ATP binding protein, putative {ECO:0000313\|EMBL:EEF42336.1}
TAIR10	AT1G50240.2	5E-38	Protein kinase family protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92314287	92317792	-
GWHAAZE00000003	mRNA	92314287	92317792	-
GWHAAZE00000003	exon	92314287	92314460	-
GWHAAZE00000003	exon	92314989	92315131	-
GWHAAZE00000003	exon	92316143	92316185	-
GWHAAZE00000003	exon	92316261	92316292	-
GWHAAZE00000003	exon	92316367	92316469	-
GWHAAZE00000003	exon	92316838	92316918	-
GWHAAZE00000003	exon	92317023	92317082	-
GWHAAZE00000003	exon	92317168	92317240	-
GWHAAZE00000003	exon	92317722	92317792	-
GWHAAZE00000003	CDS	92317722	92317792	-
GWHAAZE00000003	CDS	92317168	92317240	-
GWHAAZE00000003	CDS	92317023	92317082	-
GWHAAZE00000003	CDS	92316838	92316918	-
GWHAAZE00000003	CDS	92316367	92316469	-
GWHAAZE00000003	CDS	92316261	92316292	-
GWHAAZE00000003	CDS	92316143	92316185	-
GWHAAZE00000003	CDS	92314989	92315131	-
GWHAAZE00000003	CDS	92314287	92314460	-

Transcript Sequence
>GWHTAAZE012849 ATGGCTCCAGAATTGGTGGGAGAACAACCATACAACCACACCGCTGATTTGTGGCCCCTTGGTGTAATTTTGTATGAACTTTTTGTTGGTCAACCTCCATTCTACACAAACTCAGTATTTGCTTCCACACGGCACATCATTAAGAATCCTGTTAAATATCCAGAGAGCATGAGCTCTAACTTCCTCAGGGGTTTGCTGAATAAGGTTCCACAAAACAGACTGACATGGCCTGCTATACTTGAACATCCATTTGTGAAAGAAACTTTGGAGGATTTGGAAGCCAAGGAGAATCGTGCTGCAACTGCTGCTGCCAGAGGCTGTGATGCAGCTTGGAAAGGGGAAGGATATAATCCATTGACAAACGGATTGACTATTGCAAGTCCCGAGAGTATAAGCCATTCTCCCACTGCTACCGAAAATGACTTCCCTGAAGTTGCTAGTCCTGGTGATATTACTCAGTCAGGCTTGCCATCTGCTACTGCTTCAGTAAACAGTGGGTTTCTCCTTAACATGGGCTCAACGGGTGGGAGGGTATGTACTGAAGACAAGGATATGGTGAAAGCAATAGAGACGAGCATTGGAAAGTACATTCAAATTCTTGTGGAAGTGGGAGTGCCTGGAACTATTCTTCGGTGCTTGGAACATATGGAATTAAAAGATTTTGCAAGACCAGTTGCATTTCTTGCAAAAATGACAGGCCATCGAGCACTAATGGTTCAACTTCTAGGGAAAGGCCTGTTGGATCCAGCCAGAATGAGAAGGTTGCTTGATGGTCCATGA

Network for GWHGAAZE012835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	1	85	3.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	ULK_Fused

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.833
	SRR3591706	second leaf	0.702
	SRR3591707	mature leaf	0.213
	SRR3591708	Shoot apex	3.909
	SRR3591709	Stem	0.676
	SRR3591710	White floral bud	1.145
	SRR3591711	White flower	0.466
	SRR3591712	Green floral bud	0.354
	SRR3591713	Yellow flower	0.531
SRP173429	SRR8316895	Juvenile bud stage	1.115
	SRR8316896	Juvenile bud stage	2.119
	SRR8316897	Juvenile bud stage	0.756
	SRR8316894	Third green stage	0.212
	SRR8316900	Third green stage	1.253
	SRR8316901	Third green stage	0.831
	SRR8316898	Complete white stage	0.206
	SRR8316899	Complete white stage	1.491
	SRR8316903	Complete white stage	0.248
	SRR8316902	Silver flowering stage	0.161
	SRR8316904	Silver flowering stage	0.237
	SRR8316905	Silver flowering stage	0.278
	SRR8316906	Gold flowering stage	0.692
	SRR8316907	Gold flowering stage	0.105
	SRR8316908	Gold flowering stage	0.904
SRP132670	SRR6706286	Control	0.529
	SRR6706287	Light intensity 50%	0.633
	SRR6706288	Light intensity 20%	0.645
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.452
	CNS0095593	Slightly white alabastrum(diploid) 2	0.534
	CNS0095594	Slightly white alabastrum(diploid) 3	0.991
	CNS0095595	Whole white alabastrum(diploid) 2	0.844
	CNS0095596	Whole white alabastrum(diploid) 3	0.559
	CNS0095597	Whole white alabastrum(diploid) 4	0.432
	CNS0095598	Silvery flower (diploied) 1	0.996
	CNS0095599	Silvery flower (diploied) 2	2.031
	CNS0095600	Silvery flower (diploied) 3	0.765
	CNS0095601	Golden flower (diploid) 1	0.305
	CNS0095602	Golden flower (diploid) 2	0.589
	CNS0095603	Golden flower (diploid) 3	1.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.415
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.866
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.944
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.478
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.554
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.629
	CNS0095610	Silvery flower (tetraploid) 1	0.384
	CNS0095611	Silvery flower (tetraploid) 2	0.597
	CNS0095612	Silvery flower (tetraploid) 3	0.719
	CNS0095613	Golden flower (tetraploid) 1	0.031
	CNS0095614	Golden flower (tetraploid) 2	0.367
	CNS0095615	Golden flower (tetraploid) 3	0.134
CRA001975	CRR073297	Stem 1	1.663
	CRR073298	Stem 2	0.716
	CRR073299	Stem 3	0.296
	CRR073300	Leaf 1	1.067
	CRR073301	Leaf 2	0.642
	CRR073302	Leaf 3	0.464
	CRR073303	Juvenile bud 1	0.262
	CRR073304	Juvenile bud 2	0.308
	CRR073305	Juvenile bud 3	0.356
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.204
	CRR073317	Gold flowering 3	0.078
	CRR073318	Tawny withering 1	0.035
	CRR073319	Tawny withering 2	0.131
	CRR073320	Tawny withering 3	0.049