Gene detail

Detail information of GWHGAAZE012817

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002514436.1	calcium-dependent protein kinase, putative [Ricinus communis]
Swissprot	tr\|Q06850\|CDPK1_ARATH	Calcium-dependent protein kinase 1
trEMBL	tr\|B9RL17\|B9RL17_RICCO	Calcium-dependent protein kinase, putative {ECO:0000313\|EMBL:EEF47932.1}
TAIR10	AT5G04870.1	calcium dependent protein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	92069380	92076155	-
GWHAAZE00000003	mRNA	92069380	92076155	-
GWHAAZE00000003	exon	92069380	92069502	-
GWHAAZE00000003	exon	92070626	92070784	-
GWHAAZE00000003	exon	92071358	92071525	-
GWHAAZE00000003	exon	92072675	92072790	-
GWHAAZE00000003	exon	92073205	92073357	-
GWHAAZE00000003	exon	92073470	92073613	-
GWHAAZE00000003	exon	92075363	92076155	-
GWHAAZE00000003	CDS	92075363	92076155	-
GWHAAZE00000003	CDS	92073470	92073613	-
GWHAAZE00000003	CDS	92073205	92073357	-
GWHAAZE00000003	CDS	92072675	92072790	-
GWHAAZE00000003	CDS	92071358	92071525	-
GWHAAZE00000003	CDS	92070626	92070784	-
GWHAAZE00000003	CDS	92069380	92069502	-

Transcript Sequence
>GWHTAAZE012831 ATGGGGAATACTTGCGTCGGACCAACCATCTCAAAAAATGCCTTTTTTCAGACGGTTTCGGCCACAATATGGCGATCCCGATCACCTGAAGAAACAGATTCTACCCATAATGGAGAAACTGTTTCTCGAATACCATCTTCCAATATAGAACCCGAAGCACCAATACCTATCCAAAGCAAACCACCCGAGCAAATGACAATCCCAAAACCGAAACAAAACAAGAACAACCCAAAACCCAATAAGCCCCCACAATTGAAGAGGGTGTTGAGTGCCGGCCTTCGCACCGACTCGGTTTTACAGACCAAAACTGGCAATTTGAAGGAGTTTTTCACCTTAGGGAAGAAGTTAGGACAAGGGCAATTTGGTACAACATTTCTTTGTGTGGAAAAGGCTAGTGGGAAAAAATACGCATGTAAGTCTATAGCCAAGAGGAAATTAGTGGCCGAGGATGATGTGGAGGATGTGAGGAGGGAAATTCAAATAATGCATCATTTGGCCGGGAATCCGAATGTTATAGCCATTAAAGGGGCTTATGAGGATGCCATTGCGGTTCATGTAATTATGGAATTGTGTGCCGGTGGTGAGCTTTTTGATAGGATTATTAAAAGGGGCCATTACACAGAGAGAAAGGCGGCCGAGCTTACGAGAACTATAGTTGGTGTTGTGGAGGCTTGTCATTCATTGGGAGTTATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTCGTGGATCAAAAGGAAGATTCGCTCCTCAAGACCATTGATTTTGGGTTGTCGATATTCTTCAAGCCAGATGAAAAGTTTAATGATGTGGTTGGTAGCCCGTATTATGTTGCACCAGAAGTTCTACGAAAGCGCTATGGTCCTGAAGCAGATGTATGGAGTGCTGGTGTAATTGTCTACATTCTATTAAGTGGAGTACCTCCTTTTTGGGCAGAAACGGAGCAAGGAATATTTGAGCAGGTGCTGAATGGTGATCTTGACTTCACGTCGGATCCTTGGCCAAGTATTTCGGAAAGTGCAAAAGATTTGGTGAGGAGAATGCTTGTGCGTGACCCAAAAAGGCGGTTAACTGCATATGAAGTTTTGTGCCATCCTTGGGTACAAGTTGATGGTGTGGCGCCCGATAAACCTCTTGACTCCGCAGTTTTAAGTCGCATGAAACAATTTTCCGCCATGAACAAGCTCAAGAAAATGGCTCTTAGGGTTATTGCAGAGAACTTATCTGAAGAAGAAATAGCTGGCCTAAAACAGATGTTTAAGATGATAGATACAGATAACAGTGGTCAAATCACTTTTGAAGAACTCAAGGTTGGACTGGAAAGGGTTGGTGCAAATCTCAAGGAGTCTGAAATTTACGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGAACAATTGATTACGGGGAGTTTGTGGCTGCAACGTTGCATCTGAACAAAGTGGAGAGAGAAGATCATCTATTTGCAGCTTTCACGTACTTTGATAAAGATGGAAGTGGTTATATCACCCGGATGAGCTTCAACAGGCTTGACGGACGCATAGATTACAACGAATTTGTGGCCATGATGCAGAAAGGAAATACAGGAGCAGGAGCCAAGAACAGCCTAGAGGATAGTTTCAGCATCGGGTTTAGAGAAGCACTAAAGCTATAA

Network for GWHGAAZE012817

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	111	368	1.30E-71
PF13499.7	EF-hand_7	416	476	4.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.665
	SRR3591706	second leaf	5.270
	SRR3591707	mature leaf	9.931
	SRR3591708	Shoot apex	6.695
	SRR3591709	Stem	14.321
	SRR3591710	White floral bud	21.067
	SRR3591711	White flower	22.811
	SRR3591712	Green floral bud	15.606
	SRR3591713	Yellow flower	21.620
SRP173429	SRR8316895	Juvenile bud stage	6.429
	SRR8316896	Juvenile bud stage	6.957
	SRR8316897	Juvenile bud stage	3.695
	SRR8316894	Third green stage	3.844
	SRR8316900	Third green stage	14.700
	SRR8316901	Third green stage	13.282
	SRR8316898	Complete white stage	9.105
	SRR8316899	Complete white stage	19.280
	SRR8316903	Complete white stage	11.839
	SRR8316902	Silver flowering stage	7.230
	SRR8316904	Silver flowering stage	8.519
	SRR8316905	Silver flowering stage	4.314
	SRR8316906	Gold flowering stage	17.008
	SRR8316907	Gold flowering stage	12.465
	SRR8316908	Gold flowering stage	17.531
SRP132670	SRR6706286	Control	11.671
	SRR6706287	Light intensity 50%	12.378
	SRR6706288	Light intensity 20%	12.956
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.432
	CNS0095593	Slightly white alabastrum(diploid) 2	8.715
	CNS0095594	Slightly white alabastrum(diploid) 3	7.260
	CNS0095595	Whole white alabastrum(diploid) 2	7.268
	CNS0095596	Whole white alabastrum(diploid) 3	6.311
	CNS0095597	Whole white alabastrum(diploid) 4	5.623
	CNS0095598	Silvery flower (diploied) 1	8.447
	CNS0095599	Silvery flower (diploied) 2	7.633
	CNS0095600	Silvery flower (diploied) 3	13.878
	CNS0095601	Golden flower (diploid) 1	8.787
	CNS0095602	Golden flower (diploid) 2	13.977
	CNS0095603	Golden flower (diploid) 3	13.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.753
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.542
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.700
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.730
	CNS0095610	Silvery flower (tetraploid) 1	24.171
	CNS0095611	Silvery flower (tetraploid) 2	21.485
	CNS0095612	Silvery flower (tetraploid) 3	29.507
	CNS0095613	Golden flower (tetraploid) 1	21.334
	CNS0095614	Golden flower (tetraploid) 2	27.438
	CNS0095615	Golden flower (tetraploid) 3	25.273
CRA001975	CRR073297	Stem 1	7.386
	CRR073298	Stem 2	7.873
	CRR073299	Stem 3	4.706
	CRR073300	Leaf 1	10.360
	CRR073301	Leaf 2	9.357
	CRR073302	Leaf 3	4.645
	CRR073303	Juvenile bud 1	5.835
	CRR073304	Juvenile bud 2	4.666
	CRR073305	Juvenile bud 3	6.101
	CRR073306	Third green 1	3.624
	CRR073307	Third green 2	2.306
	CRR073308	Third green 3	4.275
	CRR073309	Second white 1	2.257
	CRR073310	Second white 2	4.984
	CRR073311	Second white 3	2.785
	CRR073312	Silver flowering 1	4.273
	CRR073313	Silver flowering 2	3.378
	CRR073314	Silver flowering 3	2.323
	CRR073315	Gold flowering 1	3.851
	CRR073316	Gold flowering 2	5.679
	CRR073317	Gold flowering 3	1.107
	CRR073318	Tawny withering 1	5.764
	CRR073319	Tawny withering 2	8.413
	CRR073320	Tawny withering 3	5.433