Detail information of GWHGAAZE012803


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007038852.10Phosphatase-related [Theobroma cacao]
Swissprottr|Q0JL44|SGT1_ORYSJ1E-154Protein SGT1 homolog
trEMBLtr|A0A061G1T8|A0A061G1T8_THECC0Phosphatase-related {ECO:0000313|EMBL:EOY23353.1}
TAIR10AT4G11260.12E-112phosphatase-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9173706191744590-
GWHAAZE00000003mRNA9173706191744590-
GWHAAZE00000003exon9173706191737228-
GWHAAZE00000003exon9173911291739216-
GWHAAZE00000003exon9173930391739382-
GWHAAZE00000003exon9173963291739770-
GWHAAZE00000003exon9174071791740782-
GWHAAZE00000003exon9174112891741224-
GWHAAZE00000003exon9174191591742062-
GWHAAZE00000003exon9174254991742673-
GWHAAZE00000003exon9174316591743234-
GWHAAZE00000003exon9174443191744590-
GWHAAZE00000003CDS9174443191744590-
GWHAAZE00000003CDS9174316591743234-
GWHAAZE00000003CDS9174254991742673-
GWHAAZE00000003CDS9174191591742062-
GWHAAZE00000003CDS9174112891741224-
GWHAAZE00000003CDS9174071791740782-
GWHAAZE00000003CDS9173963291739770-
GWHAAZE00000003CDS9173930391739382-
GWHAAZE00000003CDS9173911291739216-
GWHAAZE00000003CDS9173706191737228-
Transcript Sequence

Network for GWHGAAZE012803

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13181.7TPR_836680.083
PF13181.7TPR_871940.1
PF04969.17CS1682431.30E-11
PF05002.16SGS2843636.40E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12795SUGT1, SGT1 NOD-like receptor signaling pathway map04621
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf169.333
SRR3591706second leaf110.383
SRR3591707mature leaf167.839
SRR3591708Shoot apex115.659
SRR3591709Stem216.467
SRR3591710White floral bud194.870
SRR3591711White flower336.185
SRR3591712Green floral bud205.982
SRR3591713Yellow flower334.100
SRP173429 SRR8316895Juvenile bud stage 105.993
SRR8316896Juvenile bud stage 161.520
SRR8316897Juvenile bud stage 62.248
SRR8316894Third green stage 48.746
SRR8316900Third green stage 134.171
SRR8316901Third green stage 178.480
SRR8316898Complete white stage 74.113
SRR8316899Complete white stage 334.803
SRR8316903Complete white stage 118.719
SRR8316902Silver flowering stage122.509
SRR8316904Silver flowering stage148.634
SRR8316905Silver flowering stage88.359
SRR8316906Gold flowering stage 316.302
SRR8316907Gold flowering stage 262.507
SRR8316908Gold flowering stage 281.744
SRP132670SRR6706286Control186.534
SRR6706287Light intensity 50%168.027
SRR6706288Light intensity 20%166.547
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1200.869
CNS0095593Slightly white alabastrum(diploid) 2152.482
CNS0095594Slightly white alabastrum(diploid) 3195.034
CNS0095595Whole white alabastrum(diploid) 2133.357
CNS0095596Whole white alabastrum(diploid) 3119.172
CNS0095597Whole white alabastrum(diploid) 4139.786
CNS0095598Silvery flower (diploied) 1207.042
CNS0095599Silvery flower (diploied) 2209.780
CNS0095600Silvery flower (diploied) 3215.451
CNS0095601Golden flower (diploid) 1223.909
CNS0095602Golden flower (diploid) 2264.989
CNS0095603Golden flower (diploid) 3258.407
CNS0095604Slightly white alabastrum(tetraploid) 192.574
CNS0095605Slightly white alabastrum(tetraploid) 295.230
CNS0095606Slightly white alabastrum(tetraploid) 3136.516
CNS0095607Whole white alabastrum(tetraploid) 177.690
CNS0095608Whole white alabastrum(tetraploid) 278.220
CNS0095609Whole white alabastrum(tetraploid) 3107.789
CNS0095610Silvery flower (tetraploid) 1253.538
CNS0095611Silvery flower (tetraploid) 2228.278
CNS0095612Silvery flower (tetraploid) 3217.437
CNS0095613Golden flower (tetraploid) 1202.501
CNS0095614Golden flower (tetraploid) 2230.374
CNS0095615Golden flower (tetraploid) 3208.270
CRA001975CRR073297Stem 1202.053
CRR073298Stem 2179.935
CRR073299Stem 3194.674
CRR073300Leaf 1163.781
CRR073301Leaf 2207.274
CRR073302Leaf 3185.862
CRR073303Juvenile bud 1197.719
CRR073304Juvenile bud 2163.817
CRR073305Juvenile bud 3244.276
CRR073306Third green 1128.942
CRR073307Third green 2142.514
CRR073308Third green 3115.686
CRR073309Second white 1293.641
CRR073310Second white 2194.373
CRR073311Second white 3163.717
CRR073312Silver flowering 1224.769
CRR073313Silver flowering 2283.738
CRR073314Silver flowering 3193.226
CRR073315Gold flowering 1300.213
CRR073316Gold flowering 2396.996
CRR073317Gold flowering 3355.729
CRR073318Tawny withering 1370.793
CRR073319Tawny withering 2412.846
CRR073320Tawny withering 3369.359