Gene detail

Detail information of GWHGAAZE012782

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513612.1	5.3201E-157	hevamine-A precursor, putative [Ricinus communis]
Swissprot	tr\|P51614\|CHIT3_VITVI	2E-149	Acidic endochitinase (Precursor)
trEMBL	tr\|B9RIP3\|B9RIP3_RICCO	2E-157	Hevamine-A, putative {ECO:0000313\|EMBL:EEF49015.1}
TAIR10	AT5G24090.1	4E-108	chitinase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91479009	91479890	+
GWHAAZE00000003	mRNA	91479009	91479890	+
GWHAAZE00000003	exon	91479009	91479890	+
GWHAAZE00000003	CDS	91479009	91479890	+

Transcript Sequence
>GWHTAAZE012796 CATCCAACTGCTGCCACAACCCGCAGCGGCATCCTCCACCCCTCCGCCACCACAACTCGCGGTGGTATTGCCATTTACTGGGGCCAAAATGGCAATGAGGGAACCCTAGCCGAAACATGTGCTACCGGGAAATTTTCCTACGTCAACATAGCTTTCCTCAACAAATTCGGCAACGGCCAAACTCCTGAACTCAACCTCGCCGGCCACTGCAACCCTGCCGCCAATGGTTGCACTGCTGTTAGCGAAGGAATCCAGTACTGCCAAAAGAGAGGCATCAAGGTGATGCTCTCCCTTGGCGGTGGCATTGGAAGCTACTCGTTAGCTTCAAGTGCCGACGCAAGAAATGTTTCCCTTTACTTGTGGAACAATTTCTTGGGCGGAAAATCAAACTCGAGACCTTTAGGCAACGCCGTATTAGATGGAGTTGACTTTGACATTGAGCTCGGGTCAACTCAACATTGGGAAGATCTTGCTTCTTATTTAAAGGGTTATAGTAAATTTGGAAAGAGAGTGTACCTATCGGCTGCACCACAGTGTCCATTTCCCGATGAATTCTTGGGGGTTGCCATTGAGAAAAACTCTTTCGACTACGTTTGGGTACAGTTCTATAATAATCCTCAGTGCCAATACAGTTCTGGGAATACCAATAACCTTATAAAATCGTGGAACCGTTGGACTGCTTCGGTGAAATCTGGGAAGGTATTTATGGGGTTGCCAGCTTCAACTCAGGCAGCTGGAAGCGGGTTTATTCCACCAGAGGTGTTGACTTCCGATGTACTTCCGGTGATAAAGAGATCACCCAAGTATGGTGGGGTAATGTTTTGGTCAAAATATTGGGATGACCAGAGTGGGTATACTTCAGCCATTAAGGGCAGTGTATGA

Network for GWHGAAZE012782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	23	280	9.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.574
	SRR3591706	second leaf	61.791
	SRR3591707	mature leaf	19.871
	SRR3591708	Shoot apex	17.392
	SRR3591709	Stem	71.529
	SRR3591710	White floral bud	57.880
	SRR3591711	White flower	75.943
	SRR3591712	Green floral bud	16.501
	SRR3591713	Yellow flower	20.698
SRP173429	SRR8316895	Juvenile bud stage	8.703
	SRR8316896	Juvenile bud stage	7.087
	SRR8316897	Juvenile bud stage	7.130
	SRR8316894	Third green stage	7.019
	SRR8316900	Third green stage	36.695
	SRR8316901	Third green stage	42.090
	SRR8316898	Complete white stage	119.107
	SRR8316899	Complete white stage	69.352
	SRR8316903	Complete white stage	214.450
	SRR8316902	Silver flowering stage	78.349
	SRR8316904	Silver flowering stage	63.173
	SRR8316905	Silver flowering stage	26.761
	SRR8316906	Gold flowering stage	68.091
	SRR8316907	Gold flowering stage	105.154
	SRR8316908	Gold flowering stage	95.769
SRP132670	SRR6706286	Control	31.354
	SRR6706287	Light intensity 50%	27.684
	SRR6706288	Light intensity 20%	18.617
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.271
	CNS0095593	Slightly white alabastrum(diploid) 2	7.375
	CNS0095594	Slightly white alabastrum(diploid) 3	2.800
	CNS0095595	Whole white alabastrum(diploid) 2	7.642
	CNS0095596	Whole white alabastrum(diploid) 3	7.970
	CNS0095597	Whole white alabastrum(diploid) 4	4.642
	CNS0095598	Silvery flower (diploied) 1	29.586
	CNS0095599	Silvery flower (diploied) 2	18.291
	CNS0095600	Silvery flower (diploied) 3	114.405
	CNS0095601	Golden flower (diploid) 1	13.962
	CNS0095602	Golden flower (diploid) 2	66.982
	CNS0095603	Golden flower (diploid) 3	65.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.884
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.607
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.086
	CNS0095610	Silvery flower (tetraploid) 1	48.967
	CNS0095611	Silvery flower (tetraploid) 2	29.362
	CNS0095612	Silvery flower (tetraploid) 3	14.704
	CNS0095613	Golden flower (tetraploid) 1	8.551
	CNS0095614	Golden flower (tetraploid) 2	28.840
	CNS0095615	Golden flower (tetraploid) 3	5.940
CRA001975	CRR073297	Stem 1	6.561
	CRR073298	Stem 2	5.108
	CRR073299	Stem 3	9.005
	CRR073300	Leaf 1	9.982
	CRR073301	Leaf 2	6.511
	CRR073302	Leaf 3	13.852
	CRR073303	Juvenile bud 1	17.089
	CRR073304	Juvenile bud 2	103.760
	CRR073305	Juvenile bud 3	34.188
	CRR073306	Third green 1	30.827
	CRR073307	Third green 2	61.587
	CRR073308	Third green 3	32.695
	CRR073309	Second white 1	16.267
	CRR073310	Second white 2	7.280
	CRR073311	Second white 3	4.788
	CRR073312	Silver flowering 1	9.681
	CRR073313	Silver flowering 2	11.220
	CRR073314	Silver flowering 3	10.323
	CRR073315	Gold flowering 1	20.950
	CRR073316	Gold flowering 2	20.288
	CRR073317	Gold flowering 3	25.719
	CRR073318	Tawny withering 1	1.950
	CRR073319	Tawny withering 2	37.953
	CRR073320	Tawny withering 3	2.615