Gene detail

Detail information of GWHGAAZE012776

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009607294.1	PREDICTED: ABC transporter C family member 10-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	ABC transporter C family member 10
trEMBL	tr\|A0A061G1Z4\|A0A061G1Z4_THECC	Multidrug resistance-associated protein 14 isoform 1 {ECO:0000313\|EMBL:EOY23418.1}
TAIR10	AT3G59140.1	multidrug resistance-associated protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91416001	91424026	+
GWHAAZE00000003	mRNA	91416001	91424026	+
GWHAAZE00000003	exon	91416001	91418061	+
GWHAAZE00000003	exon	91418632	91418952	+
GWHAAZE00000003	exon	91419022	91419108	+
GWHAAZE00000003	exon	91419878	91420465	+
GWHAAZE00000003	exon	91420577	91420741	+
GWHAAZE00000003	exon	91421290	91421584	+
GWHAAZE00000003	exon	91422011	91422225	+
GWHAAZE00000003	exon	91422571	91422876	+
GWHAAZE00000003	exon	91422996	91423059	+
GWHAAZE00000003	exon	91423277	91423516	+
GWHAAZE00000003	exon	91423914	91424026	+
GWHAAZE00000003	CDS	91416001	91418061	+
GWHAAZE00000003	CDS	91418632	91418952	+
GWHAAZE00000003	CDS	91419022	91419108	+
GWHAAZE00000003	CDS	91419878	91420465	+
GWHAAZE00000003	CDS	91420577	91420741	+
GWHAAZE00000003	CDS	91421290	91421584	+
GWHAAZE00000003	CDS	91422011	91422225	+
GWHAAZE00000003	CDS	91422571	91422876	+
GWHAAZE00000003	CDS	91422996	91423059	+
GWHAAZE00000003	CDS	91423277	91423516	+
GWHAAZE00000003	CDS	91423914	91424026	+

Transcript Sequence
>GWHTAAZE012790 ATGGAGAACCTCTGGACTATGTTTTGTGGGGAATCTGATTGGCTAGATGGTAAAGGGAATTCTTCCTGTGCCAATTTCGTGCATGTGATACACCCTCATTCATGTATCAATCATGCATTGATCATTTGCTTCGATATATTGCTCTTAGTGGTGTTCTTATTGAGCATGTTTTACAAGACATCATCAAAATCCACAAACATTCGTTCTCGCTTTCGTAACACTTCAAATTTGCAGATAATTTCTACAATCTTTAACGGATTGATTGGATTGATGTACTTTTGTTTGGGCTTATGGGTGTTAGAAGAGAAGTTGAAGAAAAACAGTACCATATTCCCTCTTCATTTTTGGTTACTGGTTGTTTTTCATGGTTTCACATGGTTGTTAGTGTGCTTAACTGTGAGCATTTTGGGAACAAGTTTTTCAAAAGCCCCAATGCGGCTTTTGTCAATTCTTTCCTTTTTGTTTGCCGGAATTTCTTTCAGCTTCTCTTTCATCACCGCCATTGTTAACACTGAGCTGTCATTCAAGATAGCTTTAGATATTTTATCGTTCTTAGGAGCAGGTTTGTTGTTGTTATGCGTTTATAAGGGCTACCAATATGAAAAAATTGATGAAAAATTGATTGATAATAATGATCTTTATACACCTCTAAATACTGAGGCCAATGGAAGAAGTAGGGCTGGCTCTGCTAGCTTTGTCACCCCATTTGCCGAAGCTGGATTTATTGGTAAAATGTCATTTTGGTGGTTGAATCCATTGATGACAAAAGGCCGGGGCAAAACGCTCGAGGATGAAGATATACCCAAGTTGCGAGAGGAAGATCGAGCAGAAGCATGTTATTTTCAGTTCATGGATCAAATCAACAAACAAAAAGAAATGGACCCATCATCAGAGCCGTCGATCTTGAGGACAATAGTGATATGCCACTGGAAAGATATTATCATATCTGGAGTCTTTGCGCTTCTCAAGATAGCCACTCTTTCCGCTGGTCCTCTTCTTCTAAATGCTTTCATCGAGGTTGCTGAAGGTAAAGAAACATTTGAAAATGAGGGTTACGTATTGGTTATATTGCTTTTCTTCGCAAAGATTATAGAATCTTTGTCACAAAGGCAGTGGTACTTTCGGACCAGAATCATTGGTCTAAAAGTAAGGTCTTTGTTAACGGCTTCTATTTACAAGAAGCAACTAAGACTATCTAATGCTGCTAAGGCTAAGCACTCGGCTGGTGAGATAATGAACTATGTTACAGTGGATGCTTATCGGATCGGCGAGTTCCCTTTTTGGTTTCATCAAACTTGGACCACTTGCCTTCAGCTATGTTTTGCATTAGTCATTCTTTTTCGTGCAGTTGGGATCGCTACAATAGCAGCATTGGTGGTCATAGTTCTCACCGTCCTTTGTAATACTCCCCTTGCTAAATTGCAGCATCGGTTCCAGTCTAAGCTTATGGTGGCACAAGATGCGAGGCTCAAGGCTAGTTCAGAGGCTCTTATAAACATGAAGGTGTTGAAACTTTATGCTTGGGAATCCCATTTCAAGAACGTCATCGAAAATTTGAGGAAAGTTGAAAATAAATGGTTATCGGCAGTTCAGCTTCGTAAAGCGTATAATAGCATACTTTTTTGGTCATCCCCTGTATTGGTCTCAACGGTTACTTTTATGACTTGTTATTTCGTGGGGATTCCGTTACATGCTAACAATGTTTTCACCTTCGTAGCAACGGTACGCCTTGTACAGGACCCCGTTAGAACTATACCCGACGTTATTGGGGTTGTTATTCAAGCCAAAGTATCGTTTGTAAGAGTTTTGAAGTTTCTTGAAGCGGCCGAGCTGGAGAGTGGAAATATTCGGCAGAAAAAAGGAATGGGCAGTCCAAGCTACAACATTTCTATCAAGTCGGCCAATCTTTCGTGGGAAGAGAATGCTGTGAAGCCCACACTTAGAAACATTGATCTTGAGGTTAAGCTTGGTGAGAAGATAGCCATTTGTGGGGAGGTCGGATCAGGCAAGTCGACCCTTCTAGCTGCAATTCTTGGAGAGGTTACAACTATAACAGGATCGATTCAAGTATATGGGAACATTGCCTACGTTTCTCAGTCAGCATGGATTCAAACCGGAACTATACAAGAGAATATACTATTTGGGTCTCCCTTGGATAGCCGAAGATACAAAGAAACACTTGAGAAGTGTTCTTTGCTGAAGGACCTCGAGCTTCTACCGTATGGAGATCTAACTGAAATAGGGGAAAGAGGAGTTAATCTAAGTGGTGGTCAAAAGCAGAGGGTTCAACTTGCTCGAGCACTATATCAAGACGCTGATATTTATCTCTTGGATGATCCATTTAGTGCCGTTGATGCACACACTGCTTCAAGCCTATTTAATGAATATGTAATGGGAGCTCTTTATGGGAAGACGGTCTTACTTGTGACGCATCAAGTTGATTTCCTTCCTGCATTTGATTCCGTTTTGTTGATGTCAGACGGCGAAATCCTACATGCTGCTCCTTATCATGAACTTCTCGCCTCAAGCCAAGAATTTCTAGCATTGGTAAATGCGCACAAAGAGACTGCTGGCTCTGAAACGGCTAACGAGGTTACTTCTTCATCAAGGCACAAACCTTTGGCCACAGATATCAAGAAAACTTATGCAGAGAAGAAATCTAAGGAAGATGGAAGCGATCAATTGATTAAGCAAGAAGAGAAGGAAATAGGGGACACGGGTTTGAAGCCTTATATACAGTATCTTAATCAGAACAAGGGGTTCTTGTTCTTCACCTTGGCTGCTCTATCTCAAGTTATATTCGTTCTTAGTCAGATTTTACAAAACTCTTGGATGGCTGCAAATGTCGAAAATCCTCACGTCACCGAATTGAACTTGATCTTGGTTTACTTGTTGATTGGATTTGTGTCGACGCTCTTTCTTTTTGGTAGATCAATGATCGGAGTTGTTTTGGGTCTTCAATCCTCGAAATCTCTATTTTCGCAGCTGTTAAACTCTCTTTTTCGGGCACCCATGTCATTTTATGACTCTACACCTTTGGGAAGGATACTGAGCCGGGTCTCTTCTGACTTGAGTATTGTTGATCTTGATCTTCCGTTTAGCTTGATCTACAGTGTTGGCACTACTACACATACTTATGCTAATCTTGGAGTGTTAGCTATTGTTACATGGCAAGTCTTGTTTGTCTCTATACCGATGGTTTATTTGGCAATTCGCCTACAGAGATACTACTTCTCCTCTGCCAAAGAGTTTATGCGCATTAATGGCACAACAAAATCGTTGGTAGCAAATCATCTTGCCGAGTCTGTACAAGGAGCTATGACAGTGAGAGCTTTTGAGGAGGAAGACCGATTCTTTGCAAAGAACCTTCACCTCACTGACATAAATGCCAGTCCGTATTTCCACAGTTTTGCAGCAAATGAGTGGTTGATCCAAAGATTGGAAGTACTCAGTGCTGCCGTTCTCTCCTCTTCAGCACTCAGCATGGTTTTGCTTCCTCCTGGAACTTTTAGCTCTGGAATGATTGGAATGGCTTTGTCCTATGGACTCTCTCTAAATTTGTCGCTTGTTCTTTCAATTCAAAATCAGTGCACTTTGGCAAATTACATTATTTCTGTAGAAAGGCTTAACCAGTACATGCACGTACCAAGTGAAGCTCCTGAAGTTATAGAGCAGACCCGCCCCCCAGTCAATTGGCCAGCTAACGGTAAAGTGGTTATTGAAGATTTGCAGATCAAGTATAGACCCGATACGCCGCTTGTTCTTCGTGGGATTAGTTGCACATTTGAAGGAGGGCACAGGATTGGCATTGTTGGCCGGACTGGCAGTGGGAAAACTACTCTTATAGGTGCACTATTTCGCCTCGTGGAGCCAGTAGGAGGGAAAATTGTAGTAGATGGAATTGATATATCCACAATTGGACTTCACGATTTGAGGTCCCGCTTTGGAATTATTCCTCAAGAACCCACTCTTTTCAATGGAACTGTGAGATTCAACTTGGACCCCTTATCTCAACACACTGACCACAAAATATGGGAGGTTCTTGAGAAGTGTCAGCTTAGAGAGGCGGTTCAAGAGAAAGAAAAGGGGTTAGACTCTTTAGTTGTTCAAGATGGATCGAATTGGAGCATGGGACAAAGGCAATTGTTTTGTTTGGGCCGAGCTTTGTTGAGGAGAAGCAAGATATTGGTGCTTGATGAAGCAACTGCATCGGTTGACAATGCTACTGACTTGATTTTGCAGAAAACTATTAGAACCGAATTTGCTGATTGCACTGTGATCACGGTGGCCCACAGAATACCAACCGTGATGGATTGTACTATGGTTCTGGCCATAAGCGACGGAAAATTGGTGGAATATGATGAACCGGCGAACTTAATGAAGAGAGAAGGTTCGCTTTTTGGGCAGCTTGTGAAGGAATATTGGTCCCATTATCAATCTGCAGAATCTCATTGA

Network for GWHGAAZE012776

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	313	577	3.20E-24
PF00005.28	ABC_tran	647	781	3.30E-23
PF00664.24	ABC_membrane	922	1181	1.30E-26
PF00005.28	ABC_tran	1255	1403	2.30E-28

Protein Sequence

>GWHPAAZE012783
MENLWTMFCGESDWLDGKGNSSCANFVHVIHPHSCINHALIICFDILLLVVFLLSMFYKTSSKSTNIRSRFRNTSNLQIISTIFNGLIGLMYFCLGLWVLEEKLKKNSTIFPLHFWLLVVFHGFTWLLVCLTVSILGTSFSKAPMRLLSILSFLFAGISFSFSFITAIVNTELSFKIALDILSFLGAGLLLLCVYKGYQYEKIDEKLIDNNDLYTPLNTEANGRSRAGSASFVTPFAEAGFIGKMSFWWLNPLMTKGRGKTLEDEDIPKLREEDRAEACYFQFMDQINKQKEMDPSSEPSILRTIVICHWKDIIISGVFALLKIATLSAGPLLLNAFIEVAEGKETFENEGYVLVILLFFAKIIESLSQRQWYFRTRIIGLKVRSLLTASIYKKQLRLSNAAKAKHSAGEIMNYVTVDAYRIGEFPFWFHQTWTTCLQLCFALVILFRAVGIATIAALVVIVLTVLCNTPLAKLQHRFQSKLMVAQDARLKASSEALINMKVLKLYAWESHFKNVIENLRKVENKWLSAVQLRKAYNSILFWSSPVLVSTVTFMTCYFVGIPLHANNVFTFVATVRLVQDPVRTIPDVIGVVIQAKVSFVRVLKFLEAAELESGNIRQKKGMGSPSYNISIKSANLSWEENAVKPTLRNIDLEVKLGEKIAICGEVGSGKSTLLAAILGEVTTITGSIQVYGNIAYVSQSAWIQTGTIQENILFGSPLDSRRYKETLEKCSLLKDLELLPYGDLTEIGERGVNLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTASSLFNEYVMGALYGKTVLLVTHQVDFLPAFDSVLLMSDGEILHAAPYHELLASSQEFLALVNAHKETAGSETANEVTSSSRHKPLATDIKKTYAEKKSKEDGSDQLIKQEEKEIGDTGLKPYIQYLNQNKGFLFFTLAALSQVIFVLSQILQNSWMAANVENPHVTELNLILVYLLIGFVSTLFLFGRSMIGVVLGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDLPFSLIYSVGTTTHTYANLGVLAIVTWQVLFVSIPMVYLAIRLQRYYFSSAKEFMRINGTTKSLVANHLAESVQGAMTVRAFEEEDRFFAKNLHLTDINASPYFHSFAANEWLIQRLEVLSAAVLSSSALSMVLLPPGTFSSGMIGMALSYGLSLNLSLVLSIQNQCTLANYIISVERLNQYMHVPSEAPEVIEQTRPPVNWPANGKVVIEDLQIKYRPDTPLVLRGISCTFEGGHRIGIVGRTGSGKTTLIGALFRLVEPVGGKIVVDGIDISTIGLHDLRSRFGIIPQEPTLFNGTVRFNLDPLSQHTDHKIWEVLEKCQLREAVQEKEKGLDSLVVQDGSNWSMGQRQLFCLGRALLRRSKILVLDEATASVDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPANLMKREGSLFGQLVKEYWSHYQSAESH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.091
	SRR3591706	second leaf	24.575
	SRR3591707	mature leaf	40.671
	SRR3591708	Shoot apex	120.174
	SRR3591709	Stem	3.202
	SRR3591710	White floral bud	30.899
	SRR3591711	White flower	16.548
	SRR3591712	Green floral bud	44.140
	SRR3591713	Yellow flower	0.272
SRP173429	SRR8316895	Juvenile bud stage	29.242
	SRR8316896	Juvenile bud stage	28.420
	SRR8316897	Juvenile bud stage	29.737
	SRR8316894	Third green stage	8.676
	SRR8316900	Third green stage	7.324
	SRR8316901	Third green stage	11.454
	SRR8316898	Complete white stage	1.335
	SRR8316899	Complete white stage	2.562
	SRR8316903	Complete white stage	2.743
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.179
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.036
	SRR8316907	Gold flowering stage	0.029
	SRR8316908	Gold flowering stage	0.315
SRP132670	SRR6706286	Control	8.357
	SRR6706287	Light intensity 50%	6.903
	SRR6706288	Light intensity 20%	5.201
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.662
	CNS0095593	Slightly white alabastrum(diploid) 2	7.274
	CNS0095594	Slightly white alabastrum(diploid) 3	7.209
	CNS0095595	Whole white alabastrum(diploid) 2	2.503
	CNS0095596	Whole white alabastrum(diploid) 3	1.040
	CNS0095597	Whole white alabastrum(diploid) 4	2.254
	CNS0095598	Silvery flower (diploied) 1	15.251
	CNS0095599	Silvery flower (diploied) 2	36.006
	CNS0095600	Silvery flower (diploied) 3	4.564
	CNS0095601	Golden flower (diploid) 1	26.121
	CNS0095602	Golden flower (diploid) 2	10.834
	CNS0095603	Golden flower (diploid) 3	10.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.833
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.948
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.643
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.858
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.344
	CNS0095610	Silvery flower (tetraploid) 1	0.109
	CNS0095611	Silvery flower (tetraploid) 2	1.420
	CNS0095612	Silvery flower (tetraploid) 3	1.159
	CNS0095613	Golden flower (tetraploid) 1	0.061
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.092
CRA001975	CRR073297	Stem 1	42.341
	CRR073298	Stem 2	35.374
	CRR073299	Stem 3	35.322
	CRR073300	Leaf 1	3.757
	CRR073301	Leaf 2	4.267
	CRR073302	Leaf 3	2.453
	CRR073303	Juvenile bud 1	0.555
	CRR073304	Juvenile bud 2	0.184
	CRR073305	Juvenile bud 3	1.069
	CRR073306	Third green 1	0.101
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.479
	CRR073309	Second white 1	0.018
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.018
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	15.610
	CRR073316	Gold flowering 2	35.733
	CRR073317	Gold flowering 3	36.170
	CRR073318	Tawny withering 1	2.544
	CRR073319	Tawny withering 2	2.788
	CRR073320	Tawny withering 3	3.064