Gene detail

Detail information of GWHGAAZE012772

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EEC80057.1	0	hypothetical protein OsI_21761 [Oryza sativa Indica Group]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	6E-162	ABC transporter C family member 10
trEMBL	tr\|B8B322\|B8B322_ORYSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC80057.1}
TAIR10	AT3G59140.1	3E-125	multidrug resistance-associated protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91284245	91292156	-
GWHAAZE00000003	mRNA	91284245	91292156	-
GWHAAZE00000003	exon	91292006	91292156	-
GWHAAZE00000003	exon	91290997	91291784	-
GWHAAZE00000003	exon	91289744	91289793	-
GWHAAZE00000003	exon	91289466	91289652	-
GWHAAZE00000003	exon	91289333	91289386	-
GWHAAZE00000003	exon	91288471	91288552	-
GWHAAZE00000003	exon	91288297	91288388	-
GWHAAZE00000003	exon	91288016	91288183	-
GWHAAZE00000003	exon	91287590	91287884	-
GWHAAZE00000003	exon	91284245	91284428	-
GWHAAZE00000003	CDS	91292006	91292156	-
GWHAAZE00000003	CDS	91290997	91291784	-
GWHAAZE00000003	CDS	91289744	91289793	-
GWHAAZE00000003	CDS	91289466	91289652	-
GWHAAZE00000003	CDS	91289333	91289386	-
GWHAAZE00000003	CDS	91288471	91288552	-
GWHAAZE00000003	CDS	91288297	91288388	-
GWHAAZE00000003	CDS	91288016	91288183	-
GWHAAZE00000003	CDS	91287756	91287884	-
GWHAAZE00000003	three_prime_UTR	91287590	91287755	-
GWHAAZE00000003	three_prime_UTR	91284245	91284428	-

Transcript Sequence
>GWHTAAZE012786 ATGGCCCCGTCATCAGAGCCTTCAATTTTGCGGGCTATTATATTATGCCACAGGAGAGATATTTTTATCTCCGGGGTCTATGAGTTTTTCAAGATAATCACTCTCTCCGCTGGTCCTCTTCTTTTCAATGCCTTCATTAAGGTTGCTGAAGTAGACGCCTATCGGATCGGGGAGTTCGCGTTTTGGTTTCATCAAACATGGATGACAAGTCTTCAGCTATGCTTTGCATTAGTAATTCTTTTTCGTGCTGTAGGGCTTGCTACAATAGCAGCCTTGGTGGTCATAGTTCTCACCGTCCTTTGTAACATTCCCCTAGCTAAATTGCAGCACAGATTCCAGTCTAAGCTTATGGTGGCACAAGATGCGAGGCTTAAGGCTAGTTCAGAGGCTCTTATAAACATGAAGATCTTGAAGTTATATGCATGGGAAGCCCATGTCAAGAACATCATTGAAAATTTGAGGAAAGTGGACCATAAATGGTTATCAGCAGTTCAGCTGCGTAAAGCATATACTAGCATTCTATTTTGGTCATCGCCTGTGTTGGTCTCTACTGTTACATTCGGGACTTTTGTAGCGAATGTTTTCACTTTTGTAGCGACAGTAAGACTTGTACAGGACCCTGTTAGAACTATACCTGAAGTTATTGGGGTGGTTATTCAAGCCAAAGTTTCATTTGCAAGAATTTTGAAGTTCCACGAGGCATCTGAGCTGGAGAGTGCAAATATTCTGCAGAAAAGAGTGATGGGCGGTCCAAGCTACAACATTTCTATCAAGTCGGCCAATCTTTCGTGGGAAGAGAATACCTTGAAGCCCACACTTAGAAACATTAATCTTGAGGTTAAACTTGGTGAAAAGTTTGCTATTTGTGGGGAGGTCGGCTCAGGCAAGTCAACCCTTCTAGCTGCAATTCTTGGAGAGGTTACAACTATCATGGGGACTATTCAGGTGTCTGGAAGTATTGCCTATGTTTCTCAGTCAGCATGGATTCAGACCACCTCGATCGAGCTTCTACCATATGGAGATCTAACTGAAATAGGGGAAAGGGGAATTAATCTAAGTGGTGGTCAGAAGCAGAGAATTCAACTTGCTCGTGCCCTATATCAAGATGCCGATATTTATCTCTTGGATAATCCTTTCAGTGCTGTTGATTCACACACTGCTACAAGCCTATTCAATACGGTCTTACTTGTGCGTCAAGTTGATTTCCTTCCTGCGTTTGATTCTGTTCTGTTGATGGCGGATGGGGAAATTTTGTACTCTGCTTCTTATCATGACTTAGTTACTTGCCTCAAGCAAATAATTTCAAGACTTGATATAAAGAAGACTTACGCGGTGAAGGAATCTATTAAAGTATCTAAAGGAGATCAACTAGTTAGCAAGAAGAGAAGGAAACTGGGGACACAGGCCTCATCAGATTTGAATATCATCGATCTTGACATTCCGTTTAGCTTGATCTACAGTCTCGGGACTACCACACATGCCTATGCTAATCTAGGAGTGCTAGCTATTGTTGTTACTTGGCGAGTATTGTTTGTCTCTGTACCAATGGTTTATTTGACAATTCGCTTGCACAGATACTACTTTGCCTCTGCAAAAGAGTTTATGCGGATTAATGGCACAACCAAGTCTATGGTAGCAAACCATCTTGCTGAATCTGTACAAGGAGCTATGATACTAAGAGCTTTCGAGGAGGAAGACTGATTCTTTGCAAAGAACCTTCACCTCACTGACATAAATGCCAGCCTGTATTTCCACAGTTTTGCAGCAAATGAGTGGTTGATCCAAAGATCCGAAGTGCTCAGTGCTTCTGTTCTCTCCTCTTCAGCACTCTGCATGGTTTTGCTTCCACCTGGAACTTTCAGCTCTGGAATGATTGGTATGACTTTGTCATATGGTCTCTCACTAAACTTGTCCCTTGTTCTTTCCATTCAAAATCAGTGCACTCTGGCAAATCACATTATTTCTGTAGAAAGACTTAACCAGTACATGCACGTACCAAGTGAAGCTCCTGAAGTTATAGAAGAGAACTGCCCCCCACTCAATTGTCCAGC

Network for GWHGAAZE012772

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	52	190	5.30E-10
PF00005.28	ABC_tran	273	319	1.10E-10
PF00005.28	ABC_tran	344	379	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.601
	SRR3591706	second leaf	0.273
	SRR3591707	mature leaf	0.794
	SRR3591708	Shoot apex	0.675
	SRR3591709	Stem	0.503
	SRR3591710	White floral bud	0.206
	SRR3591711	White flower	0.435
	SRR3591712	Green floral bud	0.180
	SRR3591713	Yellow flower	0.231
SRP173429	SRR8316895	Juvenile bud stage	0.418
	SRR8316896	Juvenile bud stage	0.324
	SRR8316897	Juvenile bud stage	0.045
	SRR8316894	Third green stage	0.132
	SRR8316900	Third green stage	0.246
	SRR8316901	Third green stage	0.390
	SRR8316898	Complete white stage	0.075
	SRR8316899	Complete white stage	0.476
	SRR8316903	Complete white stage	0.162
	SRR8316902	Silver flowering stage	0.025
	SRR8316904	Silver flowering stage	0.139
	SRR8316905	Silver flowering stage	0.043
	SRR8316906	Gold flowering stage	0.164
	SRR8316907	Gold flowering stage	0.213
	SRR8316908	Gold flowering stage	0.278
SRP132670	SRR6706286	Control	0.090
	SRR6706287	Light intensity 50%	0.219
	SRR6706288	Light intensity 20%	0.276
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.297
	CNS0095593	Slightly white alabastrum(diploid) 2	0.557
	CNS0095594	Slightly white alabastrum(diploid) 3	0.292
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.363
	CNS0095598	Silvery flower (diploied) 1	0.401
	CNS0095599	Silvery flower (diploied) 2	0.249
	CNS0095600	Silvery flower (diploied) 3	0.191
	CNS0095601	Golden flower (diploid) 1	0.361
	CNS0095602	Golden flower (diploid) 2	0.243
	CNS0095603	Golden flower (diploid) 3	0.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.226
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.017
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.362
	CNS0095610	Silvery flower (tetraploid) 1	0.448
	CNS0095611	Silvery flower (tetraploid) 2	0.350
	CNS0095612	Silvery flower (tetraploid) 3	0.304
	CNS0095613	Golden flower (tetraploid) 1	0.049
	CNS0095614	Golden flower (tetraploid) 2	0.242
	CNS0095615	Golden flower (tetraploid) 3	0.111
CRA001975	CRR073297	Stem 1	0.278
	CRR073298	Stem 2	0.206
	CRR073299	Stem 3	0.022
	CRR073300	Leaf 1	0.418
	CRR073301	Leaf 2	0.257
	CRR073302	Leaf 3	0.007
	CRR073303	Juvenile bud 1	0.021
	CRR073304	Juvenile bud 2	0.056
	CRR073305	Juvenile bud 3	0.032
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.020
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.137
	CRR073316	Gold flowering 2	0.024
	CRR073317	Gold flowering 3	0.137
	CRR073318	Tawny withering 1	0.040
	CRR073319	Tawny withering 2	0.108
	CRR073320	Tawny withering 3	0.067