Gene detail

Detail information of GWHGAAZE012769

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007038934.1	0	Leucine-rich repeat protein kinase family protein [Theobroma cacao]
Swissprot	tr\|Q9SUQ3\|Y4374_ARATH	0	Probable inactive receptor kinase At4g23740 (Precursor)
trEMBL	tr\|A0A061G0Q5\|A0A061G0Q5_THECC	0	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY23435.1}
TAIR10	AT4G23740.1	3E-173	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91274222	91276727	-
GWHAAZE00000003	mRNA	91274222	91276727	-
GWHAAZE00000003	exon	91275503	91276727	-
GWHAAZE00000003	exon	91274222	91274883	-
GWHAAZE00000003	CDS	91275503	91276727	-
GWHAAZE00000003	CDS	91274222	91274883	-

Transcript Sequence
>GWHTAAZE012783 ATGGACATCAATTTCATTTTCTTGGCAATTGTTTTCTTGGGAACTCATTTCTTGATTGCAACAAGTGAACCCGTTGAAGATAAACGGTCCTTATTAGATTTCATCAAGAATATCAACCATTCTCGCCCTCTCAACTGGCAAGGGAACTCCTCTGCCTGCAGGACCTGGACTGGAGTGACATGTAATCATGATAAGTCCAGGGTTATAGCGCTTCGATTGCCTGGTATCGGTCTCCACGGCCCAATACCTTCAAACACTCTCAGCCGCTTATCCGCGATTCAAATCTTGAATTTAAGATCGAATGGTATCTCGGGCCCTTTCCCTTCTGATTTCTTAGAGCTAGAGAACTTAACTTATCTCTATCTTGAGTTCAATAACTTTTCTGGCTTGTTGCCATCGAATTTCTCGTCTTGGAAAAACTTGTTAGTTGTTGATTTTTCGAATAATGATTTTAATGGTAGTATCCCTTCTTCATTTTCGAATTTGACTCACCTCTCAGCTTTAAATCTTGCTAACAACTCACTTTCTGGCGAAATCCCTGATATCAATCTCCCTAGTTTGCAACTGCTAGATCTATCCAACAATAATCTCAGTGGAACTGTGCCTAAATCCCTTCAAAGATTTCCACATTACGCGTTCTTGGGTAATCATCTTTTCCCTGAAAATTCTCTATCTCCACTTCCTCAAGCTCTTCCACCTGATACTCAACCATCAAAGAAACCCTCAAAACTAAGTGAACCCGTAATCCTCGGAATCATAATCGGTGGTTGTGTTCTTGCATTTGCGGTACTCACTGTGCTGCTGATTCTTTGCTATTCAAAAAGAAGAAAAGAAAATGTGGTATTAGCTAAGTCCGAAAAGAAGGAAAACACTGTAAAGAAAGCGGTTTCCGGGATCCAGGAGGGAAGTAGTTCGCTTATTTTCTTTGAGGGCCGTGATCTTGCATTTGACTTGGAAGATTTATTGAGGGCTTCTGCTGAAGTTCTTGGAAAGGGTACATATGGGACGACTTATAAGGCAGCATTGGAAGATGCAACAACGGTCGTGGTGAAGAGATTAAAAGAATCGAGTATTGTAAGAAGAGAATTTGAGCAACAAATGGAGCTTGTTGGAAGCATTGGACATGAGAATGTGGCTGCCTTAAGAGCTTATTACTATTCCAAGGACGAAAAGCTTATGGTTTATGACTATTTCAATCAAGGGAGTGTGTCCGCAATGTTGCATGCAAACAGAGGCGAAGGCCGAACTCCATTAGACTGGGAAACCCGACTACGAATAGCAATTGGCTTAGCAAGAGGCATTGCTCATATCCATACACACTCTAATGGAAAACTTGTCCATGGAAACATAAAAGCCTCAAACATTTTCCTCAACTCCCAAAACTACGGTTGCATCTCCGATCTTGGTCTAGCTACCCTTATGAGCCCCGTGGTCCCACTTAGCACCCTGGGATACCGTGCCCCAGAAGTAACTGACACCCGAAAAGCATCCCAATCATCCGATGTCTATAGCTTCGGTGTATTGCTCCTCGAACTTCTCTCCGGAAAGTCCCCCATACATACCAACGGCGGTGGTGATGAGGTGGTGCACTTGGTTAGGTGGGTCCACTCAGTGGTCCGAGAGGAGTGGACCGCCGAGGTGTTTGATGTTGAGCTTTTGAGGTATCCCAATATAGAGGAGGAGATGGTGGAGATGTTGCAAATAGGAATGGCGTGTGCGGTGAGGGTGCCGGACCGGAGGCCAAAAATGCCAGAAGTGGTGAAAATGGTGGAGGAGATACGCCGGAGTAATACCGGAAACCGGCCGTCTTCGGAGATTAAGTCGGAAGGTTCAACACCAACTTTGACACCTCCAGCAGTTGATTTAGGATCTTCTTCTGTTCCATAG

Network for GWHGAAZE012769

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	62	6.90E-08
PF13855.7	LRR_8	116	175	1.30E-08
PF00560.34	LRR_1	186	207	0.33
PF00069.26	Pkinase	326	588	5.40E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.594
	SRR3591706	second leaf	4.677
	SRR3591707	mature leaf	0.813
	SRR3591708	Shoot apex	9.113
	SRR3591709	Stem	22.672
	SRR3591710	White floral bud	2.925
	SRR3591711	White flower	8.784
	SRR3591712	Green floral bud	5.382
	SRR3591713	Yellow flower	27.416
SRP173429	SRR8316895	Juvenile bud stage	3.291
	SRR8316896	Juvenile bud stage	4.537
	SRR8316897	Juvenile bud stage	2.784
	SRR8316894	Third green stage	2.181
	SRR8316900	Third green stage	1.929
	SRR8316901	Third green stage	2.672
	SRR8316898	Complete white stage	0.579
	SRR8316899	Complete white stage	1.769
	SRR8316903	Complete white stage	1.128
	SRR8316902	Silver flowering stage	2.927
	SRR8316904	Silver flowering stage	3.777
	SRR8316905	Silver flowering stage	1.292
	SRR8316906	Gold flowering stage	12.105
	SRR8316907	Gold flowering stage	15.782
	SRR8316908	Gold flowering stage	22.483
SRP132670	SRR6706286	Control	1.494
	SRR6706287	Light intensity 50%	1.725
	SRR6706288	Light intensity 20%	1.331
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.905
	CNS0095593	Slightly white alabastrum(diploid) 2	7.166
	CNS0095594	Slightly white alabastrum(diploid) 3	4.927
	CNS0095595	Whole white alabastrum(diploid) 2	1.538
	CNS0095596	Whole white alabastrum(diploid) 3	2.525
	CNS0095597	Whole white alabastrum(diploid) 4	0.988
	CNS0095598	Silvery flower (diploied) 1	2.325
	CNS0095599	Silvery flower (diploied) 2	2.129
	CNS0095600	Silvery flower (diploied) 3	3.102
	CNS0095601	Golden flower (diploid) 1	2.764
	CNS0095602	Golden flower (diploid) 2	5.691
	CNS0095603	Golden flower (diploid) 3	5.637
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.021
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.105
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.544
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.882
	CNS0095610	Silvery flower (tetraploid) 1	4.518
	CNS0095611	Silvery flower (tetraploid) 2	1.904
	CNS0095612	Silvery flower (tetraploid) 3	3.768
	CNS0095613	Golden flower (tetraploid) 1	6.935
	CNS0095614	Golden flower (tetraploid) 2	11.490
	CNS0095615	Golden flower (tetraploid) 3	6.721
CRA001975	CRR073297	Stem 1	6.713
	CRR073298	Stem 2	6.091
	CRR073299	Stem 3	8.246
	CRR073300	Leaf 1	3.973
	CRR073301	Leaf 2	5.969
	CRR073302	Leaf 3	2.680
	CRR073303	Juvenile bud 1	1.172
	CRR073304	Juvenile bud 2	1.100
	CRR073305	Juvenile bud 3	2.854
	CRR073306	Third green 1	1.189
	CRR073307	Third green 2	1.349
	CRR073308	Third green 3	1.630
	CRR073309	Second white 1	6.715
	CRR073310	Second white 2	8.564
	CRR073311	Second white 3	17.548
	CRR073312	Silver flowering 1	64.217
	CRR073313	Silver flowering 2	57.003
	CRR073314	Silver flowering 3	40.562
	CRR073315	Gold flowering 1	0.048
	CRR073316	Gold flowering 2	0.778
	CRR073317	Gold flowering 3	0.453
	CRR073318	Tawny withering 1	31.211
	CRR073319	Tawny withering 2	33.686
	CRR073320	Tawny withering 3	32.155