Gene detail

Detail information of GWHGAAZE012765

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006360182.1	2.42117E-80	PREDICTED: ethylene-responsive transcription factor CRF4-like [Solanum tuberosum]
Swissprot	tr\|Q9SUE3\|CRF4_ARATH	4E-57	Ethylene-responsive transcription factor CRF4
trEMBL	tr\|M0ZQQ9\|M0ZQQ9_SOLTU	9E-81	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006041}
TAIR10	AT4G27950.1	5E-39	cytokinin response factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91186585	91187634	-
GWHAAZE00000003	mRNA	91186585	91187634	-
GWHAAZE00000003	exon	91186585	91187634	-
GWHAAZE00000003	CDS	91186585	91187634	-

Transcript Sequence
>GWHTAAZE012779 ATGGTCAATATGAAGTCAAAGAAAATATTCGACGGCGGAAATAGAGTTATAAGGATATCTATTACGGATCCTGATGCAACAGATTCTTCGAGCGACGAAGAAGATGAGCTTTTCGGTAGGCAAAGGGTTAAAAGATATCTGAATGAGATCAATATAAAGGCTACTAATTGTACAAACAGTACATTTAGTAACACTAAGAAGAAGAAGAATAAAAAGAAAGTGGTCAATAAGGAGCAAGTGACGTCTTCATCGCCGCCGGTGAGGAAGTTCCGGGGTGTACGGCAGAGGCCGTGGGGGAAATGGGCGGCTGAGATAAGAGATCCGGCGAAACGTGTCAGGCTCTGGTTGGGTACTTACGATACTGCTGAAGAGGCGGCGATGGTTTACGATAACGCCGCGATTAAGCTACGGGGACCGGACGCTTTGACCAACTTTGTCAACCCGCCGCCCGCGAAGAAGCCTGAGGTTAATGTTTCCGTCTCCGGCTACGACTCCGGCGATGATTCTCACAACATTCTGTCCTCTCCGACGTCGGTTTTGCGATTCAGGACTCATCTGTCAGAGTCTGAACAAGGGAGTAGCCGTAGTCTAGCCGGAGAAGTGCCGGAGAGTGAAATGGGTTGTCAACGGCGGTTGTTTCCGGAACCGAAAGTTGAGGAGATTACCGGCGAATATGTTTCGCCGGAGATTCGTGACAGAAGTGCCACTGAGTTGCCGGAGGAATCTGCCGGAGATTCTCCGGAATGTCAAATGGGTCATCACCAAGAAGTGGAGGACAGTGCCGTCGAATTTGAGTTGCCGGATTATTTCACAATGGAATCGCCGGCAATCGATAATCTCTTCGATTTCCAGTTGCCGGAACCTTTATTTAGCCACAAATTTGATGCTGATGATTCTTCAATATTACTAGACAATAAGTGGTTAACTGACGATTTTTGGGTACCGTCGGATTTGTGCGGTGGAATCCAATTACCATCGGTGTTTGAAGTGGAAAATTACTTCGATGACATTAGTGGCGATTTTTTTAGTTCTGATGTTTTAATGGTGTAA

Network for GWHGAAZE012765

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	89	138	8.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.634
	SRR3591706	second leaf	2.652
	SRR3591707	mature leaf	11.094
	SRR3591708	Shoot apex	9.575
	SRR3591709	Stem	10.602
	SRR3591710	White floral bud	4.267
	SRR3591711	White flower	7.167
	SRR3591712	Green floral bud	5.470
	SRR3591713	Yellow flower	0.102
SRP173429	SRR8316895	Juvenile bud stage	3.024
	SRR8316896	Juvenile bud stage	1.295
	SRR8316897	Juvenile bud stage	3.555
	SRR8316894	Third green stage	1.533
	SRR8316900	Third green stage	1.808
	SRR8316901	Third green stage	3.121
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	5.930
	SRR8316903	Complete white stage	0.485
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.029
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.619
	SRR6706287	Light intensity 50%	1.630
	SRR6706288	Light intensity 20%	1.616
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.765
	CNS0095593	Slightly white alabastrum(diploid) 2	8.887
	CNS0095594	Slightly white alabastrum(diploid) 3	4.714
	CNS0095595	Whole white alabastrum(diploid) 2	4.053
	CNS0095596	Whole white alabastrum(diploid) 3	1.432
	CNS0095597	Whole white alabastrum(diploid) 4	3.158
	CNS0095598	Silvery flower (diploied) 1	6.910
	CNS0095599	Silvery flower (diploied) 2	12.854
	CNS0095600	Silvery flower (diploied) 3	2.094
	CNS0095601	Golden flower (diploid) 1	6.994
	CNS0095602	Golden flower (diploid) 2	5.196
	CNS0095603	Golden flower (diploid) 3	4.742
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.736
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.916
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.972
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.238
	CNS0095610	Silvery flower (tetraploid) 1	0.138
	CNS0095611	Silvery flower (tetraploid) 2	0.052
	CNS0095612	Silvery flower (tetraploid) 3	0.617
	CNS0095613	Golden flower (tetraploid) 1	0.207
	CNS0095614	Golden flower (tetraploid) 2	0.131
	CNS0095615	Golden flower (tetraploid) 3	0.059
CRA001975	CRR073297	Stem 1	3.372
	CRR073298	Stem 2	3.756
	CRR073299	Stem 3	3.881
	CRR073300	Leaf 1	4.418
	CRR073301	Leaf 2	4.517
	CRR073302	Leaf 3	4.147
	CRR073303	Juvenile bud 1	2.322
	CRR073304	Juvenile bud 2	1.708
	CRR073305	Juvenile bud 3	3.167
	CRR073306	Third green 1	0.147
	CRR073307	Third green 2	0.063
	CRR073308	Third green 3	0.237
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.063
	CRR073315	Gold flowering 1	7.173
	CRR073316	Gold flowering 2	13.609
	CRR073317	Gold flowering 3	13.821
	CRR073318	Tawny withering 1	7.668
	CRR073319	Tawny withering 2	30.701
	CRR073320	Tawny withering 3	12.250