Gene detail

Detail information of GWHGAAZE012761

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076030.1	1.7012E-117	PREDICTED: transcription factor SPEECHLESS-like [Sesamum indicum]
Swissprot	tr\|Q700C7\|SPCH_ARATH	7E-88	Transcription factor SPEECHLESS
trEMBL	tr\|A0A061G1J3\|A0A061G1J3_THECC	1E-117	Basic helix-loop-helix DNA-binding superfamily protein {ECO:0000313\|EMBL:EOY23456.1}
TAIR10	AT5G53210.1	1E-37	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	91086703	91088482	-
GWHAAZE00000003	mRNA	91086703	91088482	-
GWHAAZE00000003	exon	91086703	91087269	-
GWHAAZE00000003	exon	91088126	91088482	-
GWHAAZE00000003	CDS	91088126	91088482	-
GWHAAZE00000003	CDS	91086703	91087269	-

Transcript Sequence
>GWHTAAZE012775 ATGGGCAGTGGCGGTGGTGGTGGGGAGAGTCCTTTGGCTAATTTTTTCGAGGACTCTGACTTCGACAGGAACTACGAGTTGGGGAGCGACGACATTTTCAGCATTCTCGAGGCCTTTGAGTGTGTGCCGGAGTTCAACACGTTTGGGGAAACGGGGTCTCGAAATTCGAGCACTGCAGTGTCTGAGACAGAAGTTGAAGCCTCTCCTAGATGCAAAAGACAGAAGGTGGTGGTGGTGGAGGAAGAAGATGGGCAAGGAAGGGTTTCTCATATAACTGTGGAGAGGAATAGGAGGAAGCAAATGAATGAGCATTTGTCTGTTTTGAGGTCACTTATGCCTTGTTTCTATGTCAAAAGAGGTGACCAAGCATCAATAATAGGAGGGGTTGTTGATTACATAAAAGAGTTGCAACAAGTTCTAAAATCCCTAGAGGCCAAGAAGCAACGAAAAGTTTACAGTGATGTCCTTAGTCCAAGGCTTATTTCGAGTCCAAGGCCCTCACCACTAAGCCCTAGAAAACTACCACTAAGCCCTAGACCAAGCTTACCACCCATTAGCCCAAGGACCCCACAACCAACTAGCCCTTACAAGCCTAGGGTGCACCCAGGCTACCTCTCTCCAACTACCATGGGTAATCCTCTTGACCCGACCCCGCCTTCTAACTCCTCGGCTAATTCTTCAATTAACGATGCTGTTAATGAGCTCGTTGCTAATTCAAAATCAACAATTGCTGAAGTGGAAGTCAAATTCTCTGGCTCAAATGTTCTCCTAAAGACAGTATCGCCTCGAATGCCTGGCCAGGCAGCCAAGATAATCTCCACTCTTGAAGATCTATCGCTTGAAATCCTCGACGTGAGCATCAACACCATCGACGAAACCATGCTTAATTCCTTCACCATCAAGGTAAAATTTGGAACTAATTAA

Network for GWHGAAZE012761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	87	137	4.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
K20558	SPCH	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.291
	SRR3591706	second leaf	0.646
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	17.603
	SRR3591709	Stem	1.088
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.188
	SRR3591713	Yellow flower	0.304
SRP173429	SRR8316895	Juvenile bud stage	0.094
	SRR8316896	Juvenile bud stage	0.216
	SRR8316897	Juvenile bud stage	0.116
	SRR8316894	Third green stage	0.036
	SRR8316900	Third green stage	0.229
	SRR8316901	Third green stage	0.152
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.053
	SRR8316903	Complete white stage	0.123
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.057
	SRR6706288	Light intensity 20%	0.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.186
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.243
	CNS0095595	Whole white alabastrum(diploid) 2	0.154
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.216
	CNS0095598	Silvery flower (diploied) 1	1.600
	CNS0095599	Silvery flower (diploied) 2	0.237
	CNS0095600	Silvery flower (diploied) 3	0.119
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.325
	CNS0095603	Golden flower (diploid) 3	0.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.496
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.641
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.049
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.331
	CNS0095611	Silvery flower (tetraploid) 2	0.042
	CNS0095612	Silvery flower (tetraploid) 3	0.043
	CNS0095613	Golden flower (tetraploid) 1	0.806
	CNS0095614	Golden flower (tetraploid) 2	1.175
	CNS0095615	Golden flower (tetraploid) 3	0.274
CRA001975	CRR073297	Stem 1	0.886
	CRR073298	Stem 2	0.364
	CRR073299	Stem 3	0.259
	CRR073300	Leaf 1	0.063
	CRR073301	Leaf 2	0.148
	CRR073302	Leaf 3	0.026
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.091
	CRR073318	Tawny withering 1	0.767
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.207