Gene detail

Detail information of GWHGAAZE012743

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007038982.1	Cyclic nucleotide gated channel 1 isoform 1 [Theobroma cacao]
Swissprot	tr\|O65717\|CNGC1_ARATH	Cyclic nucleotide-gated ion channel 1
trEMBL	tr\|A0A061G269\|A0A061G269_THECC	Cyclic nucleotide gated channel 1 isoform 1 {ECO:0000313\|EMBL:EOY23483.1}
TAIR10	AT5G53130.1	cyclic nucleotide gated channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90791048	90798743	-
GWHAAZE00000003	mRNA	90791048	90798743	-
GWHAAZE00000003	exon	90791048	90791351	-
GWHAAZE00000003	exon	90792395	90792789	-
GWHAAZE00000003	exon	90793616	90793852	-
GWHAAZE00000003	exon	90795002	90795113	-
GWHAAZE00000003	exon	90796087	90796430	-
GWHAAZE00000003	exon	90798153	90798743	-
GWHAAZE00000003	CDS	90798153	90798743	-
GWHAAZE00000003	CDS	90796087	90796430	-
GWHAAZE00000003	CDS	90795002	90795113	-
GWHAAZE00000003	CDS	90793616	90793852	-
GWHAAZE00000003	CDS	90792395	90792789	-
GWHAAZE00000003	CDS	90791048	90791351	-

Transcript Sequence
>GWHTAAZE012757 GTATTTGATACATTGTGGTTATTTTCACTCAGGTTTGAGGATTGGAAATCGGAGAAAAGCTCCGAGGGGCAATATCCAACAAATGATTCTGGGATATTGCATACAACTGTAAATTCAGCTTCAGATATGTTCCAAAAAGGCTTCGAATGCAGTTCTGATGGGATTAGAAACATAAAAAGATCATTGAGATACTTTTCTTTGAATACCATTGTGGCCAAATGCTTGTGCTACAGCAAGAGAATTCTTGACCCACAAGGACCATTCCTTCAAAGGTGGAATAAGATTTTTGTATTGTTCTGCATGGTTGCTATCTCATTGGATCCTTTGTTCTTCTACATTCCAGTGGTTGATGATGAAAAGAAATGTCTTTCTTTGGACAAAAAGTTGGAGACGACAGCTAGTGTTTTGCGTTCTTTCACTGATATCTTCTACATAATTCATATAATCTTTCAATTTCGTACCGGTTTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTTGAAGATTCCTGGGCAATAGCCAAAAGATACCTTTCCTCGTACTTCATCATTGATATCCTTGCAGTCCTTCCACTGCCACAGCTTTTATCTGGCGCTCCAAACGCAGCCTTACATATATTTTCAAATGATTTGTTGCTTTCTCAGGTACTTGGTGCGTTTTATTACTTATTTTCTATAGAACGTGAAACAATCTGCTGGCAAAGAGCTTGTCGAAATCAGCCTAACTGCACGCATGCATCGTTGTATTGTGATCATAATGCCCAATATATAAGCTTTCTCAATAATTCCTGCCCTATACAGCCGGCAAATACAAAACAGTTTGATTTCGGAATATTCCTCGAAGCCCTTCAGTCGGGTGTAGTGGCATCAAATGATTTCCCACAGAAGTTCTTTTATTGTTTCTGGTGGGGCCTGCAAAATCTGAGTTCTCTTGGTCAAAACCTCAAAACAAGCACCTTTTTCTGGGAAATTGGCTTTGCAGTTTTCATTTCCATATCTGGCTTGGTTCTATTTTCGTTTCTTATTGGAAATATGCAGACGTATCTTCAGTCGACAACAATAAGATTAGAGGAAATGAGAGTGAAAAGGAGGGATGCGGAACAATGGATGTCCCACCGTCTGCTCCCTGAGAATTTAAGGGAGAGAATAAGGCGGTATGAACAATATAAATGGCAGGAAACTAGAGGTGTTGATGAAGAGAATCTCATCAGAAATCTTCCTAAGGACCTCAGAAGGGATATAAAACGCCATCTTTGTTTGGCTCTTCTCACAAGGGTGCCAATGTTCGAAAAGATGGATGAACAACTTTTGGATGCAATGTGTGACCGCTTGAAACCCGTTCTCTACACCGAGGACAGCTACATAGTACGTGAAGGCGACCCAGTTGACGAGATGCTCTTTGTAATGCGTGGCAAGCTTTTCACTGTAACCACCAACGGAGGCCGAACTGGTTTCTTCAACTCCGATGTTCTTAAAGCCGGCGACTTTTGTGGCGAAGAGCTTCTTACGTGGGCCCTAGATCCTCATTCCTCGACAAACCTCCCCATTTCCACTCGAACCGTCCAAGCTCTCACAGAAGTTGAGGCGTTTGCCCTAATGGCCGACGACTTGAAGTTCGTTGCATCTCAGTTCCGGCGACTCCACAGCAAGCAACTTCGGCACACTTTTAGGTTCTACTCTCAGCAGTGGCGGACATGGGCCGCATGTTTTATACAAGCGGCATGGCGACGTTATTCGAGGAAGAAGCAAGAAGAGTCACTTAGGGAAGAGGAAGATAGGCTGCAAAATGCATTGGCAAAAGGAGGGGGAAGCTCGCCGAGCTTGGGTGCTACTATTTATGCCTCTAGGTTCGCCGCTAATGCGCTCCGGTTGTTACGGCGTAATGGTACGCGCAAGGGGAGGTTGCCGGAGAGGATCTCGCCAATGCTGCTTCAGAAACCGGCTGAGCCTGACTTTACAGCCGAAGATAAGTAG

Network for GWHGAAZE012743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	91	199	4.70E-09
PF00520.32	Ion_trans	214	357	7.50E-10
PF00027.30	cNMP_binding	451	541	9.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.708
	SRR3591706	second leaf	20.710
	SRR3591707	mature leaf	24.683
	SRR3591708	Shoot apex	29.488
	SRR3591709	Stem	50.029
	SRR3591710	White floral bud	31.607
	SRR3591711	White flower	37.397
	SRR3591712	Green floral bud	26.189
	SRR3591713	Yellow flower	24.028
SRP173429	SRR8316895	Juvenile bud stage	15.398
	SRR8316896	Juvenile bud stage	20.839
	SRR8316897	Juvenile bud stage	11.684
	SRR8316894	Third green stage	6.825
	SRR8316900	Third green stage	16.107
	SRR8316901	Third green stage	17.527
	SRR8316898	Complete white stage	8.951
	SRR8316899	Complete white stage	30.972
	SRR8316903	Complete white stage	16.021
	SRR8316902	Silver flowering stage	11.528
	SRR8316904	Silver flowering stage	17.903
	SRR8316905	Silver flowering stage	8.069
	SRR8316906	Gold flowering stage	28.562
	SRR8316907	Gold flowering stage	19.214
	SRR8316908	Gold flowering stage	24.134
SRP132670	SRR6706286	Control	17.400
	SRR6706287	Light intensity 50%	16.724
	SRR6706288	Light intensity 20%	16.948
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.643
	CNS0095593	Slightly white alabastrum(diploid) 2	18.672
	CNS0095594	Slightly white alabastrum(diploid) 3	18.358
	CNS0095595	Whole white alabastrum(diploid) 2	18.044
	CNS0095596	Whole white alabastrum(diploid) 3	10.743
	CNS0095597	Whole white alabastrum(diploid) 4	12.071
	CNS0095598	Silvery flower (diploied) 1	28.608
	CNS0095599	Silvery flower (diploied) 2	29.353
	CNS0095600	Silvery flower (diploied) 3	33.574
	CNS0095601	Golden flower (diploid) 1	30.777
	CNS0095602	Golden flower (diploid) 2	40.509
	CNS0095603	Golden flower (diploid) 3	37.161
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.759
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.960
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.412
	CNS0095610	Silvery flower (tetraploid) 1	28.933
	CNS0095611	Silvery flower (tetraploid) 2	31.857
	CNS0095612	Silvery flower (tetraploid) 3	25.346
	CNS0095613	Golden flower (tetraploid) 1	19.569
	CNS0095614	Golden flower (tetraploid) 2	23.919
	CNS0095615	Golden flower (tetraploid) 3	21.799
CRA001975	CRR073297	Stem 1	20.182
	CRR073298	Stem 2	17.044
	CRR073299	Stem 3	19.497
	CRR073300	Leaf 1	19.426
	CRR073301	Leaf 2	20.266
	CRR073302	Leaf 3	16.122
	CRR073303	Juvenile bud 1	19.351
	CRR073304	Juvenile bud 2	12.743
	CRR073305	Juvenile bud 3	25.002
	CRR073306	Third green 1	12.164
	CRR073307	Third green 2	11.082
	CRR073308	Third green 3	11.370
	CRR073309	Second white 1	12.800
	CRR073310	Second white 2	13.129
	CRR073311	Second white 3	12.733
	CRR073312	Silver flowering 1	12.946
	CRR073313	Silver flowering 2	11.621
	CRR073314	Silver flowering 3	9.101
	CRR073315	Gold flowering 1	13.849
	CRR073316	Gold flowering 2	17.751
	CRR073317	Gold flowering 3	11.743
	CRR073318	Tawny withering 1	48.115
	CRR073319	Tawny withering 2	40.351
	CRR073320	Tawny withering 3	49.410