Gene detail

Detail information of GWHGAAZE012691

Functional Annotation

Database	Orthologs	Annotation
Nr	ACJ11746.1	luminal binding protein [Gossypium hirsutum]
Swissprot	tr\|Q03685\|BIP5_TOBAC	Luminal-binding protein 5 (Precursor)
trEMBL	tr\|D2D326\|D2D326_GOSHI	Luminal binding protein {ECO:0000313\|EMBL:ACJ11746.1}
TAIR10	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89918376	89924056	+
GWHAAZE00000003	mRNA	89918376	89924056	+
GWHAAZE00000003	exon	89918376	89918433	+
GWHAAZE00000003	exon	89919819	89920086	+
GWHAAZE00000003	exon	89920191	89920405	+
GWHAAZE00000003	exon	89920501	89920743	+
GWHAAZE00000003	exon	89921613	89922092	+
GWHAAZE00000003	exon	89922218	89922372	+
GWHAAZE00000003	exon	89923386	89923468	+
GWHAAZE00000003	exon	89923558	89924056	+
GWHAAZE00000003	CDS	89918376	89918433	+
GWHAAZE00000003	CDS	89919819	89920086	+
GWHAAZE00000003	CDS	89920191	89920405	+
GWHAAZE00000003	CDS	89920501	89920743	+
GWHAAZE00000003	CDS	89921613	89922092	+
GWHAAZE00000003	CDS	89922218	89922372	+
GWHAAZE00000003	CDS	89923386	89923468	+
GWHAAZE00000003	CDS	89923558	89924056	+

Transcript Sequence
>GWHTAAZE012705 ATGGCTGGTGCTCGGAGCACTCGCGCTTCATTGATCGTTTTAGGATTCGTTTTGTTCGGAAGCTTATTTGCATTATCTATTGCGAAAGAGGAAGCCACCAAACTTGGAACTGTAATCGGGATTGACCTTGGTACTACTTATTCTTGCGTCGGTGTTTACAAAAATGGGCATGTTGAAATCGTAGCCAATGACCAAGGTAACCGCATCACACCATCCTGGGTTGCCTTCACCGACAATGAGAGATTAATCGGTGAAGCCGCAAAGAATCAGGCCGCTGTCAATGCGGAGAGAACAATCTTCGATGTTAAAAGACTTATTGGAAGAAAATTTGAGGACAAAGAGGTACAGAGAGACATGAAGCTTGTTCCATACAAGATTGTGAACAAGGACGGAAAACCTTACATACAAGTCAAAGTTAAAGATGGGGAGACGAAAGTTTTCAGCCCTGAGGAGATCAGTGCTATGATTCTGACAAAGATGAAGGAGACGGCTGAATCATTCCTCGGAAAGAAAATCAAGGATGCAGTTGTCACTGTTCCTGCTTACTTTAACGACGCCCAGAGGCAGGCCACCAAGGATGCTGGCATTATCGCTGGTTTGAATGTAGCAAGAATTATCAATGAACCAACCGCAGCTGCCATTGCCTATGGTTTGGACAAGAAAGGTGGTGAAAAGAACATCCTTGTCTTTGACCTTGGTGGTGGTACTTTTGATGTTAGTATCTTGACCATTGATAATGGTGTTTTTGAGGTTCTTGCGACTAATGGAGATACTCATCTTGGAGGTGAGGATTTTGATCAGAGAATCATGGAATACTTCATCAAGCTAATTAAGAAGAAGTACGGTAAGGACATTAGCAAAGACAACAGAGCTATTGGAAAGCTAAGAAGAGAAGCTGAGCGAGCCAAGAGAGCTTTGAGTAGCCAGCACCAGGTCCGTGTTGAGATCGAATCTCTCTTTGATGGTGTGGATTTCTCCGAGCCACTCACCAGGGCTCGTTTTGAGGAGTTGAACAATGATCTATTCAGAAAGACAATGGGACCTGTTAAGAAGGCCATGGAGGATGCTGGACTGGAGAAACGCCAAATCGATGAAATCGTTCTTGTTGGTGGAAGCACTAGGATTCCTAAAGTTCAACAGCTTTTAAAGGATTTTTTTGATGGTAAGGAGCCAAACAAGGGAGTGAACCCCGATGAGGCTGTTGCTTATGGTGCTGCTGTACAAGGAGGAATCTTAAGTGGAGAAGGTGGTGATGAAACGAAAGGTGTGCTTCTTTTGGATGTGGCGCCGCTCACTCTTGGTATTGAAACTGTTGGTGGGGTGATGACGAAGTTGATTCCTAGGAACACTGTCATCCCTACAAAAAAATCTCAAGTTTTCACCACATACCAGGACCAACAGACCACTGTCAGCATTCAGGTTTTTGAAGGAGAAAGGAGTCTCACAAAGGACTGCCGTCTCCTTGGAAAATTCGATTTGAGTGGAATTGCCCCAGCTCCAAGAGGAACACCTCAGATTGAAGTCACATTTGAGGTTGATGCCAATGGAATTCTAAACGTAAAGGCTGAAGACAAAGCCTCGGGTAAATCTGAAAAGATCACAATCACAAACGACAAAGGGCGATTGAGCCAAGAGGAGATCGATAGAATGGTAAGAGAGGCTGAAGAATTTGCTGAGGAAGACAGGAAAGTGAAAGAGAGAATTGATGCTCGGAATAGCTTAGAGACGTACATTTACAACATGAAGAACCAAATCAATGACAAGGATAAGCTTGCAGATAAATTGGAGTCGGATGAGAAGGAGAAGATTGATACGGCCGTTAAAGAAGCACTAGAATGGTTGGATGATAATCAAAATGCCGAGAAGGAGGATTACGAGGAGAAGCTTAAGGAAGTGGAGGCGGTGTGTAATCCAGTGATCACAGCCGTTTATCAGAGGTCCGGTGGTGCTCCAGGTGGTGGATCTGATGGCGGGGATGATGATTCGCATGATGAGCTGTAG

Network for GWHGAAZE012691

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	38	645	5.70E-263

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09490	HSPA5, BIP	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.485
	SRR3591706	second leaf	2.104
	SRR3591707	mature leaf	5.647
	SRR3591708	Shoot apex	6.983
	SRR3591709	Stem	4.861
	SRR3591710	White floral bud	10.882
	SRR3591711	White flower	7.131
	SRR3591712	Green floral bud	8.302
	SRR3591713	Yellow flower	130.062
SRP173429	SRR8316895	Juvenile bud stage	14.618
	SRR8316896	Juvenile bud stage	29.615
	SRR8316897	Juvenile bud stage	16.092
	SRR8316894	Third green stage	6.582
	SRR8316900	Third green stage	33.151
	SRR8316901	Third green stage	32.175
	SRR8316898	Complete white stage	4.714
	SRR8316899	Complete white stage	4.031
	SRR8316903	Complete white stage	10.060
	SRR8316902	Silver flowering stage	8.357
	SRR8316904	Silver flowering stage	18.478
	SRR8316905	Silver flowering stage	7.679
	SRR8316906	Gold flowering stage	36.481
	SRR8316907	Gold flowering stage	40.980
	SRR8316908	Gold flowering stage	15.534
SRP132670	SRR6706286	Control	13.613
	SRR6706287	Light intensity 50%	10.343
	SRR6706288	Light intensity 20%	7.884
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.391
	CNS0095593	Slightly white alabastrum(diploid) 2	13.523
	CNS0095594	Slightly white alabastrum(diploid) 3	32.216
	CNS0095595	Whole white alabastrum(diploid) 2	17.045
	CNS0095596	Whole white alabastrum(diploid) 3	15.005
	CNS0095597	Whole white alabastrum(diploid) 4	12.292
	CNS0095598	Silvery flower (diploied) 1	59.244
	CNS0095599	Silvery flower (diploied) 2	83.194
	CNS0095600	Silvery flower (diploied) 3	44.973
	CNS0095601	Golden flower (diploid) 1	68.820
	CNS0095602	Golden flower (diploid) 2	153.005
	CNS0095603	Golden flower (diploid) 3	158.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.276
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.936
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.098
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.933
	CNS0095609	Whole white alabastrum(tetraploid) 3	92.216
	CNS0095610	Silvery flower (tetraploid) 1	28.375
	CNS0095611	Silvery flower (tetraploid) 2	22.079
	CNS0095612	Silvery flower (tetraploid) 3	13.063
	CNS0095613	Golden flower (tetraploid) 1	21.826
	CNS0095614	Golden flower (tetraploid) 2	24.220
	CNS0095615	Golden flower (tetraploid) 3	88.871
CRA001975	CRR073297	Stem 1	9.132
	CRR073298	Stem 2	9.011
	CRR073299	Stem 3	7.012
	CRR073300	Leaf 1	9.067
	CRR073301	Leaf 2	13.254
	CRR073302	Leaf 3	12.314
	CRR073303	Juvenile bud 1	4.407
	CRR073304	Juvenile bud 2	3.624
	CRR073305	Juvenile bud 3	2.179
	CRR073306	Third green 1	7.109
	CRR073307	Third green 2	9.067
	CRR073308	Third green 3	18.969
	CRR073309	Second white 1	3.873
	CRR073310	Second white 2	6.510
	CRR073311	Second white 3	7.135
	CRR073312	Silver flowering 1	48.317
	CRR073313	Silver flowering 2	83.677
	CRR073314	Silver flowering 3	91.570
	CRR073315	Gold flowering 1	1.062
	CRR073316	Gold flowering 2	1.330
	CRR073317	Gold flowering 3	0.535
	CRR073318	Tawny withering 1	2.209
	CRR073319	Tawny withering 2	2.774
	CRR073320	Tawny withering 3	3.978