Gene detail

Detail information of GWHGAAZE012690

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002276600.1	PREDICTED: importin subunit beta-1 [Vitis vinifera]
Swissprot	tr\|Q9FJD4\|IMB1_ARATH	Importin subunit beta-1 {ECO:0000305}
trEMBL	tr\|E0CV68\|E0CV68_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23029.3}
TAIR10	AT5G53480.1	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89901413	89904114	-
GWHAAZE00000003	mRNA	89901413	89904114	-
GWHAAZE00000003	exon	89901413	89901611	-
GWHAAZE00000003	exon	89901701	89904114	-
GWHAAZE00000003	CDS	89901701	89904114	-
GWHAAZE00000003	CDS	89901413	89901611	-

Transcript Sequence
>GWHTAAZE012704 ATGGCAATGGAGATCACCCAGATTCTTTTGAATGCACAGTCTGTGGATGGAAACGTTCGGAAGCATGCCGAAGAAAGTTTAAAACAGTTTCAGGAACAAAACCTTGCTGGGTTTCTATTGTCTCTCTCAGGAGAGCTTGCCAGTGAGGAGAGGCCCGTTGATAGTCGTAAATTAGCCGGTTTGATTCTTAAGAATGCCTTAGATGCCAAGGAACAACATAGAAAATTTGAGCTTGTTCAAAGATGGTTCTCCCTTGATGTTTCGGTGAAGACGCAAATAAAAGCAGGCTTGTTACAGACCCTTTCTTCCCCCGTACCCGAAGCTCGTTCAACTGCGTCACAAGTGATTGCAAAAGTTGCAGGCATTGAGCTTCCGCAGAAACAATGGCCCGAACTGATAGGATCACTCTTGTCAAACATTCACCAAGTTGCAGTTCATGTTAAGCAATCTACTTTAGAAACTTTGGGCTATTTGTGTGAAGAAGTTTCTCCAGATGTTGTAGATCAAGATCATGTAAATAAAATACTTACAGCTGTAGTTCAGGGTATGAGTGCATCGGAAGGGAGTGATGTGAGGCTTGCTGCTACCAGAGCATTGTATAATGCTCTTGGCTTTGCTCATGCAAATTTTACCAATGACATGGAGCGGGATTATATCATGAGAGTTGTTTGTGAGGCGACTTTATCTCCAGAGGTTAAGATTCGGCAAGCTGCTTTTGAGTGTTTGGTGTCCATTTCTTCAACTTACTATGAGAAACTAACTCCTTATATCCAAGACATTTTTAACATAACAGCCAAGGCTGTTAGGGAAGATGAGGAGCCCGTAGCTCTTCAAGCAATCGAATTTTGGAGCTCAATCTGTGATGAAGAGATAGATATTCTTGAAGAGTATGGGGGTGATTTTACTGCAGACTCAGAAATTCCTTGTTTTTATTTCATCAAGCAGGCGCTTCCCGCACTTGTTCCTATGCTATTAGAGACGCTCCTTAAGCAAGAGGAAGATCAGGATCAGGATGAAGGCGCTTGGAATCTTGCTATGGCTGGTGGTACCTGCCTTGGTTTGGTAGCACGGACGGTGGGAGATGATGTGGTCCCACTTGTCATCCCATTCATTGAAGAGAACATAGCGAAACCCGATTGGAGGCAAAGAGAGGCTGCAACTTATGCATTTGGCTCCATCTTGGAGGGCCCTTCGCCTGATAAATTAACTCCCATCGTTAATGTTGCTCTAAACTTCATGCTCTCAGCCTTAACAAGAGACCCAAATAGCCATGTGAAGGACACAACGGCTTGGACCCTAGGAAGAATATTCGAGTTCCTTCATGGTTCAACTATGGAGACACCCATTATTACACAAGCGAACTGCCAACAGATTATAACTGTACTTCTCCAGAGCATGAAAGATGCTTCAAATGTTGCTGAGAAAGCATGCGGTGCTCTTTATTTTCTTGCCCAAGGTTATGAAGAAATTGGTCCATCATCCCCCCTAACTCCGTATTTCCAAGAAATTGTTCAGTCCCTTCTTGCTGTTACTCATAGAGAAGATGCTGGGGAGTCGAGATTAAGGACTGGTGCATACGAGGCATTAAATGAAATGGTGAGGTGTTCTACCGACGAAACAGCTCCTATGGTGTTGCAGCTAGTTCCTGTAATTATGATGGAGCTTCACCAGACTCTTGAGGCTCAGAAACTTTCGTCTGATGAAAGAGAGAAGCAGAACGAGTTGCAAGGCCTTCTTTGTGGGTGCTTGCAGGTCATTATTCAAAAACTAGGGGTATCGGAGCCAACTAAGTATGTCTTCATGCAATATGCAGATCAGATAATGAATCTATTTCTTAGGGTTTTCGCTTGTAGGAGCGCCACTGTTCATGAGGAAGCAATGCTAGCCATTGGAGCCCTAGCCTACGCAACGGGTCCCGACTTTGCGAAATACATGCAGGAGTTTTACAAGTACTTGGAAATGGGTCTTCAAAATTTCGAGGAGTACCAAGTCTGTGCTGTGACAGTTGGTGTAGTTGGGGATATATGCAGGGCATTGGAGGAAAAGGTACTGCCCTACTGTGATGGGATTATGACCCAACTTCTTAAGGATTTATCGAGCAACCAGTTGCACCGATCTGTGAAGCCTCCTATTTTTTCGTGCTTTGGTGATATAGCGCTGGCAATAGGAGAGAATTTTGAGAAATATTTGATTTATGCGATGCCTATGCTCCAAAGTGCGGCAGAGTTATCTTCCCACACGTCTGGTGCTGATGACGAAATGATTGAGTACACTAATCTTTTGAGAAATGGGATATTGGAGGCATATTCTGGAATTTTCCAAGGGTTTAAGAACTCTCCTAAAACCCAGTTGTTGATTCCTTATGCACCGCACATTCTCCAATTCCTTGATAGCATTTACATGGAGAAGGACATGGATGATGTGGTGATGAAAACGGCAATTGGGGTACTCGGAGATTTAGCAGATACGCTGGGAAGTAATGCTGGCTCATTGATACAGCAATCTCTGTCAAGCAAAGACTTTTTGAATGAATGTTTGTCATCAGATGACCATATGATTAAGGAATCTGCTGAGTGGGCCAAGTTGGCCATCAGTCGTGCCATTGCTGTTTGA

Network for GWHGAAZE012690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.20	IBN_N	23	102	1.20E-12
PF13513.7	HEAT_EZ	380	436	5.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14293	KPNB1, IPO1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0008536	molecular_function	Ran GTPase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.608
	SRR3591706	second leaf	24.172
	SRR3591707	mature leaf	30.034
	SRR3591708	Shoot apex	26.056
	SRR3591709	Stem	40.213
	SRR3591710	White floral bud	45.815
	SRR3591711	White flower	54.649
	SRR3591712	Green floral bud	46.588
	SRR3591713	Yellow flower	56.164
SRP173429	SRR8316895	Juvenile bud stage	19.876
	SRR8316896	Juvenile bud stage	26.891
	SRR8316897	Juvenile bud stage	11.491
	SRR8316894	Third green stage	14.843
	SRR8316900	Third green stage	42.382
	SRR8316901	Third green stage	34.594
	SRR8316898	Complete white stage	17.653
	SRR8316899	Complete white stage	55.039
	SRR8316903	Complete white stage	35.537
	SRR8316902	Silver flowering stage	15.960
	SRR8316904	Silver flowering stage	28.822
	SRR8316905	Silver flowering stage	13.296
	SRR8316906	Gold flowering stage	45.922
	SRR8316907	Gold flowering stage	34.889
	SRR8316908	Gold flowering stage	39.970
SRP132670	SRR6706286	Control	51.764
	SRR6706287	Light intensity 50%	52.832
	SRR6706288	Light intensity 20%	59.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.648
	CNS0095593	Slightly white alabastrum(diploid) 2	10.974
	CNS0095594	Slightly white alabastrum(diploid) 3	13.062
	CNS0095595	Whole white alabastrum(diploid) 2	13.563
	CNS0095596	Whole white alabastrum(diploid) 3	12.900
	CNS0095597	Whole white alabastrum(diploid) 4	12.119
	CNS0095598	Silvery flower (diploied) 1	18.893
	CNS0095599	Silvery flower (diploied) 2	14.662
	CNS0095600	Silvery flower (diploied) 3	59.941
	CNS0095601	Golden flower (diploid) 1	15.956
	CNS0095602	Golden flower (diploid) 2	66.780
	CNS0095603	Golden flower (diploid) 3	62.130
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.183
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.629
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.470
	CNS0095610	Silvery flower (tetraploid) 1	57.861
	CNS0095611	Silvery flower (tetraploid) 2	61.257
	CNS0095612	Silvery flower (tetraploid) 3	60.572
	CNS0095613	Golden flower (tetraploid) 1	23.545
	CNS0095614	Golden flower (tetraploid) 2	54.585
	CNS0095615	Golden flower (tetraploid) 3	61.487
CRA001975	CRR073297	Stem 1	48.464
	CRR073298	Stem 2	49.257
	CRR073299	Stem 3	44.589
	CRR073300	Leaf 1	66.807
	CRR073301	Leaf 2	48.780
	CRR073302	Leaf 3	48.091
	CRR073303	Juvenile bud 1	56.204
	CRR073304	Juvenile bud 2	41.406
	CRR073305	Juvenile bud 3	91.133
	CRR073306	Third green 1	42.919
	CRR073307	Third green 2	38.911
	CRR073308	Third green 3	42.330
	CRR073309	Second white 1	33.925
	CRR073310	Second white 2	34.681
	CRR073311	Second white 3	41.859
	CRR073312	Silver flowering 1	42.005
	CRR073313	Silver flowering 2	41.066
	CRR073314	Silver flowering 3	34.119
	CRR073315	Gold flowering 1	14.084
	CRR073316	Gold flowering 2	24.107
	CRR073317	Gold flowering 3	22.183
	CRR073318	Tawny withering 1	41.716
	CRR073319	Tawny withering 2	26.948
	CRR073320	Tawny withering 3	38.066