Gene detail

Detail information of GWHGAAZE012681

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP05005.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FIM9\|CAMK4_ARATH	CDPK-related kinase 4
trEMBL	tr\|A0A068U8W5\|A0A068U8W5_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP05005.1}
TAIR10	AT5G24430.1	Calcium-dependent protein kinase (CDPK) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89729721	89736140	+
GWHAAZE00000003	mRNA	89729721	89736140	+
GWHAAZE00000003	exon	89729721	89730206	+
GWHAAZE00000003	exon	89731998	89732128	+
GWHAAZE00000003	exon	89732335	89732376	+
GWHAAZE00000003	exon	89732460	89732568	+
GWHAAZE00000003	exon	89732705	89732783	+
GWHAAZE00000003	exon	89733853	89734149	+
GWHAAZE00000003	exon	89734822	89734931	+
GWHAAZE00000003	exon	89735006	89735110	+
GWHAAZE00000003	exon	89735379	89735441	+
GWHAAZE00000003	exon	89735742	89735909	+
GWHAAZE00000003	exon	89736000	89736140	+
GWHAAZE00000003	CDS	89729721	89730206	+
GWHAAZE00000003	CDS	89731998	89732128	+
GWHAAZE00000003	CDS	89732335	89732376	+
GWHAAZE00000003	CDS	89732460	89732568	+
GWHAAZE00000003	CDS	89732705	89732783	+
GWHAAZE00000003	CDS	89733853	89734149	+
GWHAAZE00000003	CDS	89734822	89734931	+
GWHAAZE00000003	CDS	89735006	89735110	+
GWHAAZE00000003	CDS	89735379	89735441	+
GWHAAZE00000003	CDS	89735742	89735909	+
GWHAAZE00000003	CDS	89736000	89736140	+

Transcript Sequence
>GWHTAAZE012695 ATGGGTCATTGCTGTAGCAAACACGTTGCACTCTCAGTCGTCAAAGACGACACCGCCGGCGTCGGTAATCGGACACAGACGTTGCCGTTGCCGGAGGTCAGGTCAAGTGAGGAAACGCCGTCTCATTCATCGGCGAGCCCATGGCAGAGTCAATACCCGGCTGGAGTGTCGCCGTCGCCGTCGATGACACCAAAGAGGAAGTTCAAGTGGCCGTTCCCTCCGCCGTCGCCGGCGAAGCCGATCATGGCGTTTATATTGAAGCGGCAGGGGATAAAAAGGTCAAAAGAGGGGACTATAAATGAAGATGAAGGGGAAGGAGGGGCTCCACTTGATAAAACTTTTGGGTACCCTAAGAATTTTAGGGCGAAGTATGAGTTGGGGAAGGAGGTGGGTCGAGGGCATTTTGGTCATACTTGTTGGGCTAAGGGTAAAAAGGGACAACTAAAGAATCAAACAGTTGCTGTGAAGATCATTTCCAAAGCTAAGATGACAACAGCAATAGCAATTGAAGATGTTCGTAGGGAGGTCAAGATATTAAAGGCCTTATCTGGACACAAGAATCTCGTCAAATTTTACAACGCATTTGAGGATGCTCAAAATGTCTACGTGGTTATGGAATTTTGTGAAGGTGGTGAACTATTGGACCGTATTTTATCAAGAGGGGGAAGATACGCGGAGAATGATGCTAAAGCTATTGTTGTACAAATTTTAAGTGTAGTTTCCTTTTGTCATCTTCAAGGCGTTGTTCACCGTGATCTGAAACCTGAGAACTTTCTTTTTTCCACGAGAGAGGAGGATTCTACTATGAAGATGATAGATTTTGGTCTATCTGATTTTACTAGGCTAGATCAACGTCTCAACGATATTGTTGGAAGTGCATACTATGTTGCACCTGAAGTACTCCACAGATCATATAGTGTTGAAGCCGATATTTGGAGTATAGGCGTCATTACTTATATATTGTTATGTGGGAGCAGACCTTTCTGGTCGAGAACCGAATCGGGAATTTTCCGGTCCGTGCTGAGAGGAGACCCGAACTTCAATGACCCGCCTTGGCCCACGGTATCAGCAGAAGCCAAAGATTTTGTGAAAAGGCTTTTGAACAAAGACCATAGGAAGAGAATGACTGCTGCCCAAGCACTTACTCACCCATGGTTACGAGATGAAAACCTCACTGTGCCTTTAGATATTCTAATCTACAAATTAGTAAAGTCATATGTTCGAGCCACACCTTTAAAGCGTGCAGCATTGAAGGCTCTCTCGAAAGCTTTGACAGATGACAAACTCATTTACCTTAGGGCTCAGTTTAACCTCTTGGAACCTAAAGATGGGTGCATTTCCCTTGGCAATTTTAGGACGGCTCTCATGAAAAATGTGACCGATGCCATGAGAGAGTCGAGGGTTCCCGATATTTTGAATTTGATGGAACCTCTCTCTCACACAAAAATGGAGTTTGAAGAGTTTTGCGCAGCTGCCATTAGTGCGTATCAGCTCGAGGTTCTTGAAGAATGGGAGAATATTGCAAGTAAAGCTTTTGAATACTTCGAACAAGAAGGAAACCGAGTCACTTCGGTCGAGGAATTAGCGCAGGAAGTGAATTTGGGACAGACAGCTCATTCTTTACTCAGGGATTGGATAAGAAATTCTGATGGAAAACTCAATTTTGTGGGTTATACCAAGTTTTTGCATGGTGTTACCATCCGTAGTTCTAATACAAGACATCAATTATAA

Network for GWHGAAZE012681

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	124	386	9.00E-71

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.731
	SRR3591706	second leaf	3.016
	SRR3591707	mature leaf	7.029
	SRR3591708	Shoot apex	8.509
	SRR3591709	Stem	7.465
	SRR3591710	White floral bud	8.086
	SRR3591711	White flower	8.942
	SRR3591712	Green floral bud	5.624
	SRR3591713	Yellow flower	8.185
SRP173429	SRR8316895	Juvenile bud stage	5.488
	SRR8316896	Juvenile bud stage	8.395
	SRR8316897	Juvenile bud stage	3.373
	SRR8316894	Third green stage	3.502
	SRR8316900	Third green stage	7.818
	SRR8316901	Third green stage	7.942
	SRR8316898	Complete white stage	4.175
	SRR8316899	Complete white stage	16.112
	SRR8316903	Complete white stage	7.447
	SRR8316902	Silver flowering stage	4.474
	SRR8316904	Silver flowering stage	6.330
	SRR8316905	Silver flowering stage	3.510
	SRR8316906	Gold flowering stage	12.282
	SRR8316907	Gold flowering stage	10.093
	SRR8316908	Gold flowering stage	11.918
SRP132670	SRR6706286	Control	15.032
	SRR6706287	Light intensity 50%	11.918
	SRR6706288	Light intensity 20%	11.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.889
	CNS0095593	Slightly white alabastrum(diploid) 2	4.517
	CNS0095594	Slightly white alabastrum(diploid) 3	5.170
	CNS0095595	Whole white alabastrum(diploid) 2	3.609
	CNS0095596	Whole white alabastrum(diploid) 3	3.833
	CNS0095597	Whole white alabastrum(diploid) 4	5.449
	CNS0095598	Silvery flower (diploied) 1	8.132
	CNS0095599	Silvery flower (diploied) 2	9.089
	CNS0095600	Silvery flower (diploied) 3	7.525
	CNS0095601	Golden flower (diploid) 1	9.358
	CNS0095602	Golden flower (diploid) 2	7.583
	CNS0095603	Golden flower (diploid) 3	8.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.984
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.769
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.014
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.450
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.553
	CNS0095610	Silvery flower (tetraploid) 1	8.896
	CNS0095611	Silvery flower (tetraploid) 2	6.129
	CNS0095612	Silvery flower (tetraploid) 3	6.055
	CNS0095613	Golden flower (tetraploid) 1	3.285
	CNS0095614	Golden flower (tetraploid) 2	6.270
	CNS0095615	Golden flower (tetraploid) 3	3.153
CRA001975	CRR073297	Stem 1	4.828
	CRR073298	Stem 2	4.886
	CRR073299	Stem 3	3.451
	CRR073300	Leaf 1	6.216
	CRR073301	Leaf 2	5.164
	CRR073302	Leaf 3	3.408
	CRR073303	Juvenile bud 1	4.122
	CRR073304	Juvenile bud 2	2.434
	CRR073305	Juvenile bud 3	5.303
	CRR073306	Third green 1	1.836
	CRR073307	Third green 2	2.018
	CRR073308	Third green 3	2.254
	CRR073309	Second white 1	2.096
	CRR073310	Second white 2	2.449
	CRR073311	Second white 3	2.060
	CRR073312	Silver flowering 1	1.335
	CRR073313	Silver flowering 2	1.589
	CRR073314	Silver flowering 3	2.931
	CRR073315	Gold flowering 1	3.569
	CRR073316	Gold flowering 2	3.149
	CRR073317	Gold flowering 3	1.458
	CRR073318	Tawny withering 1	5.385
	CRR073319	Tawny withering 2	5.406
	CRR073320	Tawny withering 3	4.137