Detail information of GWHGAAZE012676


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010068806.15.2621E-118PREDICTED: serine/arginine-rich splicing factor SR34A [Eucalyptus grandis]
Swissprottr|A2RVS6|SR34A_ARATH2E-114Serine/arginine-rich splicing factor SR34A
trEMBLtr|A0A061G2B7|A0A061G2B7_THECC4E-121SER/ARG-rich protein 34A {ECO:0000313|EMBL:EOY23696.1}
TAIR10AT3G49430.36E-78SER/ARG-rich protein 34A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8962262689630018-
GWHAAZE00000003mRNA8962262689630018-
GWHAAZE00000003exon8962994589630018-
GWHAAZE00000003exon8962974589629783-
GWHAAZE00000003exon8962764289627893-
GWHAAZE00000003exon8962736289627483-
GWHAAZE00000003exon8962712889627193-
GWHAAZE00000003exon8962696889627042-
GWHAAZE00000003exon8962673889626882-
GWHAAZE00000003exon8962633389626379-
GWHAAZE00000003exon8962592089625977-
GWHAAZE00000003exon8962500389625052-
GWHAAZE00000003exon8962484389624899-
GWHAAZE00000003exon8962430489624395-
GWHAAZE00000003exon8962412989624200-
GWHAAZE00000003exon8962262689622689-
GWHAAZE00000003five_prime_UTR8962994589630018-
GWHAAZE00000003five_prime_UTR8962974589629783-
GWHAAZE00000003five_prime_UTR8962764289627893-
GWHAAZE00000003five_prime_UTR8962744989627483-
GWHAAZE00000003CDS8962736289627448-
GWHAAZE00000003CDS8962712889627193-
GWHAAZE00000003CDS8962696889627042-
GWHAAZE00000003CDS8962673889626882-
GWHAAZE00000003CDS8962633389626379-
GWHAAZE00000003CDS8962592089625977-
GWHAAZE00000003CDS8962500389625052-
GWHAAZE00000003CDS8962484389624899-
GWHAAZE00000003CDS8962430489624395-
GWHAAZE00000003CDS8962412989624200-
GWHAAZE00000003CDS8962262689622689-
Transcript Sequence

Network for GWHGAAZE012676

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_19763.70E-17
PF00076.23RRM_11251872.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12890SFRS1, ASF, SF2 Spliceosome map03040
IL-17 signaling pathwaymap04657

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.241
SRR3591706second leaf25.604
SRR3591707mature leaf22.708
SRR3591708Shoot apex50.987
SRR3591709Stem23.369
SRR3591710White floral bud23.570
SRR3591711White flower21.835
SRR3591712Green floral bud23.186
SRR3591713Yellow flower23.153
SRP173429 SRR8316895Juvenile bud stage 29.506
SRR8316896Juvenile bud stage 40.297
SRR8316897Juvenile bud stage 17.245
SRR8316894Third green stage 12.367
SRR8316900Third green stage 37.750
SRR8316901Third green stage 38.601
SRR8316898Complete white stage 12.969
SRR8316899Complete white stage 45.382
SRR8316903Complete white stage 21.506
SRR8316902Silver flowering stage12.892
SRR8316904Silver flowering stage15.534
SRR8316905Silver flowering stage7.452
SRR8316906Gold flowering stage 21.667
SRR8316907Gold flowering stage 21.734
SRR8316908Gold flowering stage 21.826
SRP132670SRR6706286Control29.617
SRR6706287Light intensity 50%28.894
SRR6706288Light intensity 20%30.253
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.095
CNS0095593Slightly white alabastrum(diploid) 227.452
CNS0095594Slightly white alabastrum(diploid) 325.770
CNS0095595Whole white alabastrum(diploid) 221.589
CNS0095596Whole white alabastrum(diploid) 320.140
CNS0095597Whole white alabastrum(diploid) 419.245
CNS0095598Silvery flower (diploied) 133.898
CNS0095599Silvery flower (diploied) 222.584
CNS0095600Silvery flower (diploied) 315.842
CNS0095601Golden flower (diploid) 124.389
CNS0095602Golden flower (diploid) 216.952
CNS0095603Golden flower (diploid) 318.983
CNS0095604Slightly white alabastrum(tetraploid) 129.747
CNS0095605Slightly white alabastrum(tetraploid) 226.609
CNS0095606Slightly white alabastrum(tetraploid) 351.713
CNS0095607Whole white alabastrum(tetraploid) 121.037
CNS0095608Whole white alabastrum(tetraploid) 215.486
CNS0095609Whole white alabastrum(tetraploid) 328.363
CNS0095610Silvery flower (tetraploid) 120.826
CNS0095611Silvery flower (tetraploid) 216.143
CNS0095612Silvery flower (tetraploid) 313.383
CNS0095613Golden flower (tetraploid) 116.092
CNS0095614Golden flower (tetraploid) 220.080
CNS0095615Golden flower (tetraploid) 312.259
CRA001975CRR073297Stem 131.220
CRR073298Stem 227.547
CRR073299Stem 329.590
CRR073300Leaf 128.208
CRR073301Leaf 226.405
CRR073302Leaf 322.022
CRR073303Juvenile bud 117.406
CRR073304Juvenile bud 213.425
CRR073305Juvenile bud 320.096
CRR073306Third green 15.380
CRR073307Third green 26.081
CRR073308Third green 35.002
CRR073309Second white 14.252
CRR073310Second white 25.190
CRR073311Second white 34.201
CRR073312Silver flowering 14.909
CRR073313Silver flowering 23.390
CRR073314Silver flowering 33.401
CRR073315Gold flowering 16.589
CRR073316Gold flowering 29.746
CRR073317Gold flowering 37.880
CRR073318Tawny withering 121.589
CRR073319Tawny withering 221.358
CRR073320Tawny withering 323.740