Gene detail

Detail information of GWHGAAZE012672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003634174.1	1.8159E-165	PREDICTED: two-component response regulator-like APRR5 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q6LA42\|APRR5_ARATH	9E-47	Two-component response regulator-like APRR5
trEMBL	tr\|F6H771\|F6H771_VITVI	7E-166	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48094.1}
TAIR10	AT5G24470.1	1E-43	pseudo-response regulator 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89527872	89533638	-
GWHAAZE00000003	mRNA	89527872	89533638	-
GWHAAZE00000003	exon	89533401	89533638	-
GWHAAZE00000003	exon	89531739	89532295	-
GWHAAZE00000003	exon	89531464	89531619	-
GWHAAZE00000003	exon	89530808	89531023	-
GWHAAZE00000003	exon	89530404	89530539	-
GWHAAZE00000003	exon	89529583	89529922	-
GWHAAZE00000003	exon	89528321	89529038	-
GWHAAZE00000003	exon	89527872	89528094	-
GWHAAZE00000003	five_prime_UTR	89533612	89533638	-
GWHAAZE00000003	CDS	89533401	89533611	-
GWHAAZE00000003	CDS	89531739	89532295	-
GWHAAZE00000003	CDS	89531464	89531619	-
GWHAAZE00000003	CDS	89530808	89531023	-
GWHAAZE00000003	CDS	89530404	89530539	-
GWHAAZE00000003	CDS	89529583	89529922	-
GWHAAZE00000003	CDS	89528321	89529038	-
GWHAAZE00000003	CDS	89527972	89528094	-
GWHAAZE00000003	three_prime_UTR	89527872	89527971	-

Transcript Sequence
>GWHTAAZE012686 AGACTTTGTGAAGTTCTAGATAGACAAATGGGTGAAATTGTGGTGAGTAGTGAAGGTATGATGGATTTGGAAGTGAGAGAAGCAGAGCCACCGCAGACGATGGAGGACAGCGGTCCGGCGGCGGTTGTGAGGTGGGAGAAGTTCCTTCCAAGAATGGCTCTTAGGGTTTTGTTGGTTGAAGCTGATGATTCAACTAGGCAGATCATTGCAGCTTTGCTCAGAAAATGCAGTTACAAAGTTGCTGCAGTTTCGGATGGATTAAAGGCATGGGAAGTACTAAAAGGAAGACCTCAACAAATAGACCTCATATTGACAGAAGTAGAGCTCCCATCTATCTCTGGATATGCTCTTCTTACCTTGATTGCCGAGCACGAAATCTGCAAAAACATCCCCGTCATAAGTACGATACGACCCCACTATTCCTTTGCATATCCCAAATTAAGAGTCCACTTTCTGTTTCAAAACATTATCAACGTACCAAAACTCACGATAGGAAACAAGTTTTGTTTTGAACGCTTGATTGTGATGAAATTAGTGCAATCTCGAAAAATGTGAAAGTTAAACATGGACTCTTGATTAGGGACTAAGGGAGTACTTTGCGTTTCAACTTTCCCAATGATTTTTGTTTTGCTCATTGTTTTAACATTCTTTCTTGATTATGCAGTGATGTCATCGATCGATTCAGTTAGCACCGTGTATAAATGCATGTTGAGGGGTGCTGCAGACTTTCTTGTCAAGCCTCTTAGAAAGAATGAGCTGAGGAACTTGTGGCAACATGTTTGGAGGAGACAAGCTTCGGCTAGTGGAGGAAATGGGACCAGAGAGGAGAGCGATGTTCAACAAAAAGTCGAAGCCACAGCCGAAAACAATGCTACTAGTAATCATTCAAGTGGTTATATGGCTTGCCTTAAGAGAAATAGGGAATGCATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGCACAAAAATGTCGAAACCAGACTTGGAAGCTGAAGGAGAATACATGGAAAATATGCAAGACCTCTCACAGCCTAAATGGAGTAAATCTCTATCCGACAAAATTATTATACAATCACAGAAGCACACAGAGTGCACTGATGCTAGTCAGCAGTTGCTGCTGCATGACGGTGAAGCCGGAGGTATAATACCTTTTTTACCCCTCAATCTCGTGTTGCCTGTTTACATTTCGTGGAAGTCCCCAGCTTCTAAGTCCGCTTTCAGGCCTGGAGTGATGGCATCACCTACCAATGATGCCTTTCACTTCCCATTACTCAATAGGGGCCTGTTCTCCTCGGTCGGAATAGGATCCGGAGCCCCCACCCGGAATAATGCTAATATGGTAACTTGGGAAGAAGACCTGGGTCGTCAAAGTCAATGGGAACGTACCAATGATGCAACTGAAGCATGTGACAATGATCAGGCTCCTGCCAACTCATCGAGAGAAGCCATTGACCTAATTGGAACATTTGATAACTACCCAAAACGCAGCTATCGAAGCTTAGGTTTAAATGATGGTACAAACAAGGCTGATTATTCACCACTATTAGATTTATCCTTGAGAAGATCTCATCCTAGTGGCTCGGTGAATCAAGCTATGGACGAGGGGCATAGGTTGAAGCAATCCAATGCCTCGGCTTTTTCTCGGTACATTAACAGGACATCTCAGGCACTAAATTCAACATCAGTTAGCATTTGCAATCAACAGAATGAGTACGAGACTTATTCTGACAAACAAGTATCTAATCATGCCCTCGAGTATAACTCTGACAATCACGGTCCCTCACAAAATTCTCAGAAAAACATGATCTCCAAGGCAAATGATCAATCGGGTCAAGGAGAAATCCATTTCCCTTCCTCTCAACGGAAAGTATTTCCTGTCCCGGTTCCAGTGAGAGGCATAAGATTTGATAGCCTATCCAATGCCTATGGTTCTTCTGTATATCCTCAAATGCTTTGTACGCAATCGGGCCTATCACCAATGCCGAGCCCCGGTTCGTCGGGCCCTCAGGGACCCGCATTTCCATTTGGTCAGTCAAATCCCCCAGAAACAAGAAACTCTCAAAATCTTCAAAAACTTATGGATCAAAACGCCAAAACTGAGCAATTGGAGCAAATGCAAGGGCGTAAACAGGAGTATTTGGACGATCGAGGGAATTTTTCTTCTTCTGCTAATGATCAGAGTGCAACTAGCAGTTTCTGTAACGGGAATGTCAACTTGGTTCCAGTTGTTCGGGCTACTGCTGAGTGTGGAAATGATGCTACTACCCTTATTCACGATGGGAACTCTAATCGAGCAACACAGAGAGAAGCCGCGCTAAACAAATTCCGCATGAAGAGGAAAGACAGATGCTACGAGAAGAAGGTACGATACGAAAGCAGGAAAAAACTTGCAGAGCAGCGTCCAAGAGTGAAAGGGCAATTTGTTCGTCAAGTGAACAATGAACCTCCACCTGTTGAAACCGATAATTCAATGGAAGCAATGTAGAAGCTAAATTCAGTTTTTGGAGGCTTTCTAGAACAAACCCGTAAAGTAGATTTAGTTTGTTTGATCGATCAGCTTCAACTTGAGGAATTCACCGCTTTTT

Network for GWHGAAZE012672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	47	124	8.20E-11
PF06203.15	CCT	757	799	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12130	PRR5	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.912
	SRR3591706	second leaf	24.644
	SRR3591707	mature leaf	77.403
	SRR3591708	Shoot apex	6.508
	SRR3591709	Stem	29.641
	SRR3591710	White floral bud	65.427
	SRR3591711	White flower	47.931
	SRR3591712	Green floral bud	72.148
	SRR3591713	Yellow flower	21.852
SRP173429	SRR8316895	Juvenile bud stage	6.195
	SRR8316896	Juvenile bud stage	7.186
	SRR8316897	Juvenile bud stage	4.475
	SRR8316894	Third green stage	4.770
	SRR8316900	Third green stage	20.843
	SRR8316901	Third green stage	16.807
	SRR8316898	Complete white stage	5.768
	SRR8316899	Complete white stage	47.487
	SRR8316903	Complete white stage	14.638
	SRR8316902	Silver flowering stage	10.927
	SRR8316904	Silver flowering stage	15.305
	SRR8316905	Silver flowering stage	7.282
	SRR8316906	Gold flowering stage	17.176
	SRR8316907	Gold flowering stage	13.903
	SRR8316908	Gold flowering stage	21.793
SRP132670	SRR6706286	Control	28.500
	SRR6706287	Light intensity 50%	37.895
	SRR6706288	Light intensity 20%	50.451
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.939
	CNS0095593	Slightly white alabastrum(diploid) 2	19.387
	CNS0095594	Slightly white alabastrum(diploid) 3	11.544
	CNS0095595	Whole white alabastrum(diploid) 2	17.464
	CNS0095596	Whole white alabastrum(diploid) 3	15.758
	CNS0095597	Whole white alabastrum(diploid) 4	26.710
	CNS0095598	Silvery flower (diploied) 1	23.182
	CNS0095599	Silvery flower (diploied) 2	8.120
	CNS0095600	Silvery flower (diploied) 3	20.354
	CNS0095601	Golden flower (diploid) 1	7.313
	CNS0095602	Golden flower (diploid) 2	19.470
	CNS0095603	Golden flower (diploid) 3	18.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.181
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.457
	CNS0095610	Silvery flower (tetraploid) 1	24.141
	CNS0095611	Silvery flower (tetraploid) 2	30.568
	CNS0095612	Silvery flower (tetraploid) 3	52.891
	CNS0095613	Golden flower (tetraploid) 1	16.703
	CNS0095614	Golden flower (tetraploid) 2	20.603
	CNS0095615	Golden flower (tetraploid) 3	50.105
CRA001975	CRR073297	Stem 1	9.851
	CRR073298	Stem 2	8.752
	CRR073299	Stem 3	6.438
	CRR073300	Leaf 1	8.549
	CRR073301	Leaf 2	8.656
	CRR073302	Leaf 3	6.914
	CRR073303	Juvenile bud 1	7.100
	CRR073304	Juvenile bud 2	2.687
	CRR073305	Juvenile bud 3	8.321
	CRR073306	Third green 1	12.018
	CRR073307	Third green 2	11.666
	CRR073308	Third green 3	11.302
	CRR073309	Second white 1	9.496
	CRR073310	Second white 2	15.548
	CRR073311	Second white 3	15.680
	CRR073312	Silver flowering 1	6.356
	CRR073313	Silver flowering 2	7.872
	CRR073314	Silver flowering 3	9.002
	CRR073315	Gold flowering 1	9.010
	CRR073316	Gold flowering 2	12.046
	CRR073317	Gold flowering 3	7.805
	CRR073318	Tawny withering 1	3.585
	CRR073319	Tawny withering 2	4.217
	CRR073320	Tawny withering 3	3.390