Detail information of GWHGAAZE012667


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADN27527.10caffeic acid O-methyltransferase [Camellia sinensis]
Swissprottr|Q9XGW0|COMT1_OCIBA0Caffeic acid 3-O-methyltransferase 1
trEMBLtr|E2FYC3|E2FYC3_CAMSI0Caffeic acid O-methyltransferase {ECO:0000313|EMBL:ADN27527.1}
TAIR10AT5G54160.12E-133O-methyltransferase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8937676289379967+
GWHAAZE00000003mRNA8937676289379967+
GWHAAZE00000003exon8937676289377098+
GWHAAZE00000003exon8937829289378588+
GWHAAZE00000003exon8937871289378776+
GWHAAZE00000003exon8937944789379967+
GWHAAZE00000003CDS8937676289377098+
GWHAAZE00000003CDS8937829289378588+
GWHAAZE00000003CDS8937871289378776+
GWHAAZE00000003CDS8937944789379743+
GWHAAZE00000003three_prime_UTR8937974489379967+
Transcript Sequence

Network for GWHGAAZE012667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08100.12Dimerisation35865.20E-21
PF00891.19Methyltransf_21153134.80E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13066E2.1.1.68, COMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0008171molecular_functionO-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf779.354
SRR3591706second leaf165.607
SRR3591707mature leaf138.482
SRR3591708Shoot apex125.307
SRR3591709Stem2607.367
SRR3591710White floral bud150.029
SRR3591711White flower159.954
SRR3591712Green floral bud83.958
SRR3591713Yellow flower231.212
SRP173429 SRR8316895Juvenile bud stage 161.655
SRR8316896Juvenile bud stage 137.644
SRR8316897Juvenile bud stage 56.864
SRR8316894Third green stage 38.333
SRR8316900Third green stage 115.594
SRR8316901Third green stage 130.023
SRR8316898Complete white stage 111.245
SRR8316899Complete white stage 177.290
SRR8316903Complete white stage 130.666
SRR8316902Silver flowering stage166.717
SRR8316904Silver flowering stage215.776
SRR8316905Silver flowering stage122.326
SRR8316906Gold flowering stage 499.328
SRR8316907Gold flowering stage 368.546
SRR8316908Gold flowering stage 608.493
SRP132670SRR6706286Control163.684
SRR6706287Light intensity 50%153.618
SRR6706288Light intensity 20%151.008
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.433
CNS0095593Slightly white alabastrum(diploid) 277.361
CNS0095594Slightly white alabastrum(diploid) 383.600
CNS0095595Whole white alabastrum(diploid) 263.545
CNS0095596Whole white alabastrum(diploid) 343.403
CNS0095597Whole white alabastrum(diploid) 453.339
CNS0095598Silvery flower (diploied) 190.112
CNS0095599Silvery flower (diploied) 293.783
CNS0095600Silvery flower (diploied) 3141.184
CNS0095601Golden flower (diploid) 199.999
CNS0095602Golden flower (diploid) 2134.813
CNS0095603Golden flower (diploid) 3129.532
CNS0095604Slightly white alabastrum(tetraploid) 153.341
CNS0095605Slightly white alabastrum(tetraploid) 242.118
CNS0095606Slightly white alabastrum(tetraploid) 3141.249
CNS0095607Whole white alabastrum(tetraploid) 141.571
CNS0095608Whole white alabastrum(tetraploid) 236.066
CNS0095609Whole white alabastrum(tetraploid) 373.311
CNS0095610Silvery flower (tetraploid) 1133.381
CNS0095611Silvery flower (tetraploid) 292.736
CNS0095612Silvery flower (tetraploid) 362.153
CNS0095613Golden flower (tetraploid) 1162.261
CNS0095614Golden flower (tetraploid) 2169.690
CNS0095615Golden flower (tetraploid) 342.076
CRA001975CRR073297Stem 1178.076
CRR073298Stem 2117.683
CRR073299Stem 3117.937
CRR073300Leaf 173.664
CRR073301Leaf 288.131
CRR073302Leaf 3105.664
CRR073303Juvenile bud 197.263
CRR073304Juvenile bud 294.422
CRR073305Juvenile bud 3136.048
CRR073306Third green 1379.971
CRR073307Third green 2350.991
CRR073308Third green 3328.361
CRR073309Second white 1253.497
CRR073310Second white 2227.302
CRR073311Second white 3192.614
CRR073312Silver flowering 1387.275
CRR073313Silver flowering 2400.533
CRR073314Silver flowering 3335.123
CRR073315Gold flowering 154.071
CRR073316Gold flowering 251.836
CRR073317Gold flowering 364.003
CRR073318Tawny withering 1752.392
CRR073319Tawny withering 2609.710
CRR073320Tawny withering 31128.257