Gene detail

Detail information of GWHGAAZE012655

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009773192.1	0	PREDICTED: autophagy-related protein 13 [Nicotiana sylvestris]
trEMBL	tr\|F6H7A9\|F6H7A9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48116.1}
TAIR10	AT3G49590.2	1E-116	Autophagy-related protein 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	89145331	89149748	-
GWHAAZE00000003	mRNA	89145331	89149748	-
GWHAAZE00000003	exon	89148754	89149748	-
GWHAAZE00000003	exon	89148381	89148534	-
GWHAAZE00000003	exon	89147762	89147943	-
GWHAAZE00000003	exon	89145331	89145652	-
GWHAAZE00000003	CDS	89148754	89149748	-
GWHAAZE00000003	CDS	89148381	89148534	-
GWHAAZE00000003	CDS	89147762	89147943	-
GWHAAZE00000003	CDS	89145331	89145652	-

Transcript Sequence
>GWHTAAZE012669 ATGGATGTGTATAGTAGTCCTCAGGCCGAATTTGGGCGATTAGAACAAATACTCTCGCAGTTTCTTCTAAAAAGCTTGCACATTATATTGGACTCGAGGGTTCCTTCAATTCGACCACGTGGCCGCCTTAGTGAGGTGAAAAAGAGTGACAAATGGTTTAGCTTAGTATTAGGAGACCGCCCTGCAGCTTTAGAAAATTTGAATTTCTGGCACAAAAATTTAATGGAACCTATGATAATTGACATTATACTTGTTCAAGAAATTCCGAATTTCTCATCTGGGCAAAATTCAAGTACTACTTCAGGATTGGGGAAATTCATTGAGACGGTCATTGAGAGGTGGGTTGTTCAATATGAGCATCTAAGGACAATGTCTCCTCAAATTGGAGAACCTTCGGCCTACAGAAAAACATACAAGAAATCACTTATCCTGTTACGTTCACTTTATTCAATGATGAGGCTCCTTCCTGCACACCGGGCCTACCGAAAGCTATGTTCATTAAGTAAGGCTTGTGATTTCGATATCAATTACAAGGTATCTTCATTTAGTGCTCCGTTCTCAAGGGCAGAGGAAGATATGATGAAGCAATATAATTTCGTACCTGTTGACGCCCAACAAGGTCGAATTTCTATATCTTTGACATATCGAGAAAGTCTGTCGGATTTCAACCTGGAGACTTCGGCATTATTTCCACCGCAGATTATAACGGATTATGTTGGTAGCCCTGCTACTGACCCTCTGAGAGCTTTTCCTTTATCGGAGAAGGGTGGTTTTTGTGCTACGTCTGTCCCATTGAGAGGAGGGATGATACAATCACCTACTTCAACACCATTTCAACGCCCACACAGCTGGACAAGTGGTCTCCACAGAGGAGCCCATTTGGCACCAAACCACCCCGTCTTAGGTGGATCCCCGCATGCACACCACGCGTCTAGTTTGAAACATGAGTTTTCTTCGTCACCGACAGATATATGTAGTCATATTAAAAACCAAAAACATTCTCTTCCACCGCAATCCCCCAAAAGCATAACAAAGCATGACCCTTCATCCCAAGAGTCCTTATCTGGAATCAGGTCATTGAGGAAGTCAGATTCGTACAGAGCAGGGGAGTCATATTCTGGGATAACAAATCATTATTCTGGTCAGAAGTTATCAAGAGATAGCAAAGATGATTCGGGGAGGTTCTCGGGTTTGCTATCTTCAAGTGGCTCGCCGCGAATTGGTTTCTCAAGAAGTTCTAGTAGATTGTCTTTCCAAGAAGACTTGGACGATTTCGACTTCTCATGTCCTTTTATTGTTGATGATGTTGATACTTCTGATTCACAAGCCAGTTCGAATCTTGATGGGAACAAAGCCTTGGCATCTACTTCACAAGGGTTGTTAATGGCTAAGAAATCACAGGATGCGGCTGTTGGTGCCCTTGTTCACATGCTGAGGACCGCACCTCCTCTGCGGCAAGACTCTAGCTGCTACTCCTCCTTGAGAGCCGAAACACCCCAGGGTGGGGAATTTGGTACAGCTTCTGAAATCTCTCGCGCTAAGAACATGTCAGATGCGCTTGAGGAGCTTCGTGGTTACAGAGAATTGAGAGACCTCCTTCTTTCCAAGAGTGGAACCGAGTTGGCTAACTTGGTTATCAAGAGCGACCCATAA

Network for GWHGAAZE012655

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10033.10	ATG13	20	218	4.50E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08331	ATG13	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy
GO:1990316	cellular_component	Atg1/ULK1 kinase complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.085
	SRR3591706	second leaf	4.229
	SRR3591707	mature leaf	5.195
	SRR3591708	Shoot apex	9.892
	SRR3591709	Stem	23.773
	SRR3591710	White floral bud	14.594
	SRR3591711	White flower	23.004
	SRR3591712	Green floral bud	12.906
	SRR3591713	Yellow flower	21.929
SRP173429	SRR8316895	Juvenile bud stage	5.959
	SRR8316896	Juvenile bud stage	10.233
	SRR8316897	Juvenile bud stage	4.046
	SRR8316894	Third green stage	4.693
	SRR8316900	Third green stage	11.434
	SRR8316901	Third green stage	12.115
	SRR8316898	Complete white stage	7.149
	SRR8316899	Complete white stage	17.367
	SRR8316903	Complete white stage	14.846
	SRR8316902	Silver flowering stage	10.957
	SRR8316904	Silver flowering stage	16.452
	SRR8316905	Silver flowering stage	7.724
	SRR8316906	Gold flowering stage	26.377
	SRR8316907	Gold flowering stage	29.300
	SRR8316908	Gold flowering stage	28.011
SRP132670	SRR6706286	Control	12.375
	SRR6706287	Light intensity 50%	13.543
	SRR6706288	Light intensity 20%	12.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.364
	CNS0095593	Slightly white alabastrum(diploid) 2	6.112
	CNS0095594	Slightly white alabastrum(diploid) 3	7.041
	CNS0095595	Whole white alabastrum(diploid) 2	9.186
	CNS0095596	Whole white alabastrum(diploid) 3	10.763
	CNS0095597	Whole white alabastrum(diploid) 4	10.572
	CNS0095598	Silvery flower (diploied) 1	8.492
	CNS0095599	Silvery flower (diploied) 2	9.691
	CNS0095600	Silvery flower (diploied) 3	30.289
	CNS0095601	Golden flower (diploid) 1	14.877
	CNS0095602	Golden flower (diploid) 2	38.614
	CNS0095603	Golden flower (diploid) 3	35.618
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.365
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.916
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.467
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.897
	CNS0095610	Silvery flower (tetraploid) 1	29.724
	CNS0095611	Silvery flower (tetraploid) 2	35.068
	CNS0095612	Silvery flower (tetraploid) 3	35.498
	CNS0095613	Golden flower (tetraploid) 1	16.608
	CNS0095614	Golden flower (tetraploid) 2	26.650
	CNS0095615	Golden flower (tetraploid) 3	47.436
CRA001975	CRR073297	Stem 1	14.353
	CRR073298	Stem 2	16.630
	CRR073299	Stem 3	16.773
	CRR073300	Leaf 1	23.957
	CRR073301	Leaf 2	17.976
	CRR073302	Leaf 3	15.069
	CRR073303	Juvenile bud 1	17.642
	CRR073304	Juvenile bud 2	16.992
	CRR073305	Juvenile bud 3	21.102
	CRR073306	Third green 1	17.801
	CRR073307	Third green 2	11.599
	CRR073308	Third green 3	13.593
	CRR073309	Second white 1	27.903
	CRR073310	Second white 2	26.269
	CRR073311	Second white 3	25.722
	CRR073312	Silver flowering 1	36.303
	CRR073313	Silver flowering 2	31.576
	CRR073314	Silver flowering 3	30.326
	CRR073315	Gold flowering 1	3.301
	CRR073316	Gold flowering 2	6.133
	CRR073317	Gold flowering 3	4.286
	CRR073318	Tawny withering 1	16.023
	CRR073319	Tawny withering 2	8.105
	CRR073320	Tawny withering 3	11.007