Gene detail

Detail information of GWHGAAZE012644

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009770360.1	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SZA4\|CDC21_ARATH	Cell division cycle 20.1, cofactor of APC complex
trEMBL	tr\|M1CKM2\|M1CKM2_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400069533}
TAIR10	AT4G33270.1	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88993131	88995051	+
GWHAAZE00000003	mRNA	88993131	88995051	+
GWHAAZE00000003	exon	88993131	88993400	+
GWHAAZE00000003	exon	88993519	88993788	+
GWHAAZE00000003	exon	88994051	88994632	+
GWHAAZE00000003	exon	88994911	88995051	+
GWHAAZE00000003	CDS	88993131	88993400	+
GWHAAZE00000003	CDS	88993519	88993788	+
GWHAAZE00000003	CDS	88994051	88994632	+
GWHAAZE00000003	CDS	88994911	88995051	+

Transcript Sequence
>GWHTAAZE012658 TTGGATAGATTCATACCGAACCGGTCGGCCATGGATATGGATTATGCTCATTACATGCTGACAGAAGGCAGAAAAGATAAAGAGAACCCAGCCGTGAGCTCTCCATCAAGGGAAGCATATCGGAAGCAACTTGCTGAAACCTTCAACATGAACCGAACCCGAATACTCGCATTCAAGAACAAGCCACCCACCCCTGTTGAGGCCATTCCTACCAATTCCTCCTCATCAGTTCAACAGGCCAAACCCAAAACCCGTCGATATATTCCTCAGACTTCTGAGAGGACTCTAGATGCTCCTGATCTTGTGGACGATTACTACTTGAATTTATTGGATTGGGGCAGCGGCAATGTTCTTGCCATTGCTCTTGGAAACACAGTATATCTATGGGATGCTTCTGATGGTTCTACTACTGAACTTGTCACACTTGATGACGAAAATGGTCCGGTGACAAGTGTTAAATGGGCTCCTGATGGTCGCCACATTGCTGTCGGCTTGAACAACTCTGCTGTTCAGCTTTGGGATTCAGCAGCTAACCGAATGCTAAGAACCTTGAGAGGTGGCCACGGATCTCGAGTTGGTTCGTTGGATTGGAACAATCACATCCTGACCACCGGAGGAATGGACGGTCTGATCATCAACAACGATGTTAGAGTGAGGGATCCTATAATTGAAACTTATAGAGGCCATCACCAAGAAGTTTGTGGGCTAAAATGGTCAGCCTCAGGCCAACAATTAGCTAGTGGCGGCAATGATAATCTCCTCCACATATGGGACAGATCAATGTCCTCTTCCAACTCACCAATACAGCCACTTCACAGGCTCGAAGACCATACTGCTGCCGTTAAAGCCCTAGCTTGGTGTCCGTTCCAGGGAAATTTGCTGGCGTCCGGTGGTGGTGGGGGTGATCGGTGCATCAAATTTTGGAACACTCACACTGGGGCTTGCTTGAATTCGGTGGACACTGGCTCACAAGTGTGCGCGCTGTTGTGGAACAAGAATGAGCGAGAGTTGCTTAGCTCACATGGGTTTACTCAGAATCAGCTCACTCTGTGGAAGTACCCATCAATGGTGAAGATGGCTGAGCTTACTGGCCATACATCAAGAGTTCTTTTCATGGCTCAGAGCCCAGATGGTTGTACTGTTGCATCTGCAGCAGGAGATGAGACACTCAGGTTTTGGAATGTTTTTGGGACACCCGAGGTAGCCAAACCTGCTCCCAAGTCTAACCCAGAGCCATTTGCCCACTTGAACCGCATTCGCTGA

Network for GWHGAAZE012644

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.8	ANAPC4_WD40	143	199	2.90E-07
PF00400.33	WD40	224	258	1.00E-06
PF00400.33	WD40	269	309	0.0025
PF00400.33	WD40	359	394	0.00076

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03363	CDC20	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	135.601
	SRR3591706	second leaf	73.635
	SRR3591707	mature leaf	49.425
	SRR3591708	Shoot apex	302.052
	SRR3591709	Stem	105.882
	SRR3591710	White floral bud	42.144
	SRR3591711	White flower	38.016
	SRR3591712	Green floral bud	34.364
	SRR3591713	Yellow flower	25.290
SRP173429	SRR8316895	Juvenile bud stage	114.462
	SRR8316896	Juvenile bud stage	134.669
	SRR8316897	Juvenile bud stage	67.848
	SRR8316894	Third green stage	46.451
	SRR8316900	Third green stage	58.239
	SRR8316901	Third green stage	71.257
	SRR8316898	Complete white stage	17.937
	SRR8316899	Complete white stage	81.811
	SRR8316903	Complete white stage	51.486
	SRR8316902	Silver flowering stage	24.766
	SRR8316904	Silver flowering stage	33.314
	SRR8316905	Silver flowering stage	17.764
	SRR8316906	Gold flowering stage	52.733
	SRR8316907	Gold flowering stage	50.999
	SRR8316908	Gold flowering stage	32.750
SRP132670	SRR6706286	Control	55.522
	SRR6706287	Light intensity 50%	56.153
	SRR6706288	Light intensity 20%	55.542
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	97.431
	CNS0095593	Slightly white alabastrum(diploid) 2	67.387
	CNS0095594	Slightly white alabastrum(diploid) 3	63.475
	CNS0095595	Whole white alabastrum(diploid) 2	46.563
	CNS0095596	Whole white alabastrum(diploid) 3	27.414
	CNS0095597	Whole white alabastrum(diploid) 4	37.815
	CNS0095598	Silvery flower (diploied) 1	87.172
	CNS0095599	Silvery flower (diploied) 2	59.940
	CNS0095600	Silvery flower (diploied) 3	28.802
	CNS0095601	Golden flower (diploid) 1	68.595
	CNS0095602	Golden flower (diploid) 2	36.445
	CNS0095603	Golden flower (diploid) 3	37.817
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.053
	CNS0095610	Silvery flower (tetraploid) 1	31.792
	CNS0095611	Silvery flower (tetraploid) 2	32.511
	CNS0095612	Silvery flower (tetraploid) 3	23.231
	CNS0095613	Golden flower (tetraploid) 1	26.942
	CNS0095614	Golden flower (tetraploid) 2	29.105
	CNS0095615	Golden flower (tetraploid) 3	25.246
CRA001975	CRR073297	Stem 1	113.392
	CRR073298	Stem 2	93.113
	CRR073299	Stem 3	29.935
	CRR073300	Leaf 1	69.303
	CRR073301	Leaf 2	78.437
	CRR073302	Leaf 3	9.598
	CRR073303	Juvenile bud 1	11.048
	CRR073304	Juvenile bud 2	2.894
	CRR073305	Juvenile bud 3	17.061
	CRR073306	Third green 1	1.241
	CRR073307	Third green 2	0.858
	CRR073308	Third green 3	2.551
	CRR073309	Second white 1	1.328
	CRR073310	Second white 2	1.303
	CRR073311	Second white 3	1.677
	CRR073312	Silver flowering 1	0.602
	CRR073313	Silver flowering 2	1.359
	CRR073314	Silver flowering 3	1.478
	CRR073315	Gold flowering 1	3.912
	CRR073316	Gold flowering 2	7.980
	CRR073317	Gold flowering 3	2.755
	CRR073318	Tawny withering 1	60.913
	CRR073319	Tawny withering 2	69.586
	CRR073320	Tawny withering 3	58.278