Gene detail

Detail information of GWHGAAZE012643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26560.3	7.7388E-128	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q94F87\|CMT2_ARATH	4E-103	DNA (cytosine-5)-methyltransferase CMT2
trEMBL	tr\|F6HEG9\|F6HEG9_VITVI	1E-132	Cytosine-specific methyltransferase {ECO:0000256\|RuleBase:RU000417}
TAIR10	AT4G19020.1	5E-88	chromomethylase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88973657	88981124	+
GWHAAZE00000003	mRNA	88973657	88981124	+
GWHAAZE00000003	exon	88973657	88973818	+
GWHAAZE00000003	exon	88978265	88978333	+
GWHAAZE00000003	exon	88978414	88978500	+
GWHAAZE00000003	exon	88978588	88978675	+
GWHAAZE00000003	exon	88978975	88979018	+
GWHAAZE00000003	exon	88979091	88979189	+
GWHAAZE00000003	exon	88979454	88979497	+
GWHAAZE00000003	exon	88979599	88979668	+
GWHAAZE00000003	exon	88979735	88979838	+
GWHAAZE00000003	exon	88980950	88981124	+
GWHAAZE00000003	CDS	88973657	88973818	+
GWHAAZE00000003	CDS	88978265	88978333	+
GWHAAZE00000003	CDS	88978414	88978500	+
GWHAAZE00000003	CDS	88978588	88978675	+
GWHAAZE00000003	CDS	88978975	88979018	+
GWHAAZE00000003	CDS	88979091	88979189	+
GWHAAZE00000003	CDS	88979454	88979497	+
GWHAAZE00000003	CDS	88979599	88979668	+
GWHAAZE00000003	CDS	88979735	88979838	+
GWHAAZE00000003	CDS	88980950	88981124	+

Transcript Sequence
>GWHTAAZE012657 ATGTTTGGTGGGGAATTTTATGACATGTATGAAGTTAACTCTATTGCCAATCAAGATCGTGCACGCACTCAACCGAGCACTAATCTTGTGAATAACCTTTCACATAACCGCCTGTTCAAACTCATCTTATCGCTCATAGCCCTCTTCGCTTTCATTCTCGAAAAATTGCCGCAATTTCCACTTCCTACGCATGACGTGGTTTTGAAATATGGGGCTCCAAGTGAGTTTGAGCGTAATATTGTTGCTTATGACGAAGGGCAGCCTAGGGATCTTGAAAAGGCTCTGACTCTTGGTGACGCCATCTCTGATCTTCCTCCAATCACAAATCGGGAAGTTCGTGGCAAGATGTCATACACAAAACAGCCAGAAACTGAATTCCAAAAATATATTAGAGCTACTAAATCTGGTCAGGATGACTATGAGCGAGTTTGCCGAATCCCTAAACGAAAGGGAGCAAATTTTAGGGACCTTCCTGGTGTTGTTGTGGGAGCTGACAATGTAGTTCAGAGGACAGATGACCCGGACTTGATGCCATCTGGAAAGCAATGGGTACCAGAATATGCCATAAACTTTGGTCATGGAAAGTCTAAAAGACCATTTGCCCGATTATGGTGGGATGAGACGGTGCCAACTGTATTGTGCTCTCCAGACCCTCACTGCCAGAAAATTTTACATCCCGAGCAAGATAGAGTCCTTACGGTTCGTGAGTATGCAAGGTTACAAGGTTTTCATGACTATTATGAGTTCTGCGGGGATTTCAAAGTAAGATACTGTCAAGTGGGGAACGCAGTGGCTGTACCAGTTGGACGCGCTTTGGGATATGTTTTGGGGATGGCAGTGCGAAAGCTAAGTGGAGATGAACCTTTAATGACTCTTCCTCCAAAGTTCTCTCATTCAACAACTCTTCAATTGCTGCACTCATCTGCTGAAAAGAAGCTTTGA

Network for GWHGAAZE012643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00145.18	DNA_methylase	188	274	4.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00558	DNMT1, dcm	Metabolic pathways	map01100
K00558	DNMT1, dcm	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.465
	SRR3591706	second leaf	7.214
	SRR3591707	mature leaf	2.395
	SRR3591708	Shoot apex	19.869
	SRR3591709	Stem	5.806
	SRR3591710	White floral bud	6.338
	SRR3591711	White flower	3.044
	SRR3591712	Green floral bud	7.376
	SRR3591713	Yellow flower	1.750
SRP173429	SRR8316895	Juvenile bud stage	10.899
	SRR8316896	Juvenile bud stage	15.087
	SRR8316897	Juvenile bud stage	5.635
	SRR8316894	Third green stage	4.939
	SRR8316900	Third green stage	8.900
	SRR8316901	Third green stage	11.669
	SRR8316898	Complete white stage	1.844
	SRR8316899	Complete white stage	11.530
	SRR8316903	Complete white stage	6.199
	SRR8316902	Silver flowering stage	2.241
	SRR8316904	Silver flowering stage	4.942
	SRR8316905	Silver flowering stage	1.337
	SRR8316906	Gold flowering stage	5.165
	SRR8316907	Gold flowering stage	3.803
	SRR8316908	Gold flowering stage	2.497
SRP132670	SRR6706286	Control	6.972
	SRR6706287	Light intensity 50%	8.465
	SRR6706288	Light intensity 20%	7.703
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.795
	CNS0095593	Slightly white alabastrum(diploid) 2	21.289
	CNS0095594	Slightly white alabastrum(diploid) 3	15.598
	CNS0095595	Whole white alabastrum(diploid) 2	16.090
	CNS0095596	Whole white alabastrum(diploid) 3	11.548
	CNS0095597	Whole white alabastrum(diploid) 4	13.486
	CNS0095598	Silvery flower (diploied) 1	11.842
	CNS0095599	Silvery flower (diploied) 2	10.968
	CNS0095600	Silvery flower (diploied) 3	3.465
	CNS0095601	Golden flower (diploid) 1	12.831
	CNS0095602	Golden flower (diploid) 2	4.781
	CNS0095603	Golden flower (diploid) 3	3.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.358
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.761
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.673
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.777
	CNS0095610	Silvery flower (tetraploid) 1	6.900
	CNS0095611	Silvery flower (tetraploid) 2	4.357
	CNS0095612	Silvery flower (tetraploid) 3	5.826
	CNS0095613	Golden flower (tetraploid) 1	4.729
	CNS0095614	Golden flower (tetraploid) 2	4.914
	CNS0095615	Golden flower (tetraploid) 3	2.231
CRA001975	CRR073297	Stem 1	12.802
	CRR073298	Stem 2	10.748
	CRR073299	Stem 3	4.228
	CRR073300	Leaf 1	11.689
	CRR073301	Leaf 2	11.021
	CRR073302	Leaf 3	2.857
	CRR073303	Juvenile bud 1	3.643
	CRR073304	Juvenile bud 2	1.753
	CRR073305	Juvenile bud 3	3.580
	CRR073306	Third green 1	0.434
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	1.047
	CRR073309	Second white 1	0.372
	CRR073310	Second white 2	0.435
	CRR073311	Second white 3	0.614
	CRR073312	Silver flowering 1	0.591
	CRR073313	Silver flowering 2	0.168
	CRR073314	Silver flowering 3	0.230
	CRR073315	Gold flowering 1	1.605
	CRR073316	Gold flowering 2	2.357
	CRR073317	Gold flowering 3	0.655
	CRR073318	Tawny withering 1	5.456
	CRR073319	Tawny withering 2	6.544
	CRR073320	Tawny withering 3	3.713