Gene detail

Detail information of GWHGAAZE012635

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011075806.1	PREDICTED: exportin-1-like [Sesamum indicum]
trEMBL	tr\|A5BVQ5\|A5BVQ5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61845.1}
TAIR10	AT5G17020.2	exportin 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88867485	88886395	+
GWHAAZE00000003	mRNA	88867485	88886395	+
GWHAAZE00000003	exon	88867485	88867583	+
GWHAAZE00000003	exon	88868588	88868704	+
GWHAAZE00000003	exon	88870920	88871012	+
GWHAAZE00000003	exon	88871126	88871197	+
GWHAAZE00000003	exon	88871318	88871425	+
GWHAAZE00000003	exon	88871512	88871594	+
GWHAAZE00000003	exon	88872858	88872996	+
GWHAAZE00000003	exon	88873116	88873184	+
GWHAAZE00000003	exon	88873298	88873375	+
GWHAAZE00000003	exon	88873532	88873594	+
GWHAAZE00000003	exon	88874412	88874519	+
GWHAAZE00000003	exon	88874917	88875015	+
GWHAAZE00000003	exon	88875209	88875412	+
GWHAAZE00000003	exon	88875680	88875739	+
GWHAAZE00000003	exon	88877067	88877177	+
GWHAAZE00000003	exon	88877636	88877733	+
GWHAAZE00000003	exon	88879227	88879335	+
GWHAAZE00000003	exon	88880100	88880165	+
GWHAAZE00000003	exon	88880247	88880345	+
GWHAAZE00000003	exon	88880472	88880552	+
GWHAAZE00000003	exon	88881210	88881299	+
GWHAAZE00000003	exon	88881540	88881625	+
GWHAAZE00000003	exon	88881774	88881854	+
GWHAAZE00000003	exon	88881953	88882135	+
GWHAAZE00000003	exon	88882323	88882389	+
GWHAAZE00000003	exon	88884310	88884420	+
GWHAAZE00000003	exon	88884575	88884682	+
GWHAAZE00000003	exon	88884784	88884921	+
GWHAAZE00000003	exon	88885038	88885175	+
GWHAAZE00000003	exon	88885411	88885515	+
GWHAAZE00000003	exon	88886273	88886395	+
GWHAAZE00000003	CDS	88867485	88867583	+
GWHAAZE00000003	CDS	88868588	88868704	+
GWHAAZE00000003	CDS	88870920	88871012	+
GWHAAZE00000003	CDS	88871126	88871197	+
GWHAAZE00000003	CDS	88871318	88871425	+
GWHAAZE00000003	CDS	88871512	88871594	+
GWHAAZE00000003	CDS	88872858	88872996	+
GWHAAZE00000003	CDS	88873116	88873184	+
GWHAAZE00000003	CDS	88873298	88873375	+
GWHAAZE00000003	CDS	88873532	88873594	+
GWHAAZE00000003	CDS	88874412	88874519	+
GWHAAZE00000003	CDS	88874917	88875015	+
GWHAAZE00000003	CDS	88875209	88875412	+
GWHAAZE00000003	CDS	88875680	88875739	+
GWHAAZE00000003	CDS	88877067	88877177	+
GWHAAZE00000003	CDS	88877636	88877733	+
GWHAAZE00000003	CDS	88879227	88879335	+
GWHAAZE00000003	CDS	88880100	88880165	+
GWHAAZE00000003	CDS	88880247	88880345	+
GWHAAZE00000003	CDS	88880472	88880552	+
GWHAAZE00000003	CDS	88881210	88881299	+
GWHAAZE00000003	CDS	88881540	88881625	+
GWHAAZE00000003	CDS	88881774	88881854	+
GWHAAZE00000003	CDS	88881953	88882135	+
GWHAAZE00000003	CDS	88882323	88882389	+
GWHAAZE00000003	CDS	88884310	88884420	+
GWHAAZE00000003	CDS	88884575	88884682	+
GWHAAZE00000003	CDS	88884784	88884921	+
GWHAAZE00000003	CDS	88885038	88885175	+
GWHAAZE00000003	CDS	88885411	88885515	+
GWHAAZE00000003	CDS	88886273	88886395	+

Transcript Sequence
>GWHTAAZE012649 ATGGCTGCGGAGAAGCTTAGGGATTTGAGCCAACCTATTGATGTTGGTTTGCTTGATGCTACTGTTGAAGCCTTCTATGGTACCGGATCTAAAGAGGAGAGAACTGCTGCAGACCAGATCTTGCGGGAGTTGCAAAATAACCCAGACATGTGGCTTCAAGTGGTTCGCATTCTGTCAAATTCACAAAACTTGAATACCAAGTTCTTCGCTTTGCAAGTTCTTGAAGGTGTTATCAAGTACAGGTGGAATGCATTGCCTGTTGAACAAAGAGATGGAATGAAAAACTACATTTCCGATGTTATTGTAAAGCTTTCAAGTGATGAGATTTCTTTTCGACGGGAAAGGCTGTATGTAAACAAACTCAATATTATACTGGTTCAGATTTTGAAGCATGAGTGGCCAGCCAGGTGGCGAAGCTTCGTTCCAGATCTAGTTGCAGCAGCTAAAACTAGTGAAACAATTTGTGAGAACTGCATGGCCATATTGAAACTGTTAAGTGAAGAGGTTTTCGATTTCTCAAGGGGCGAAATGACTCAACAGAAGATCAAAGAGCTTAAGCAGTCACTAAACAGTGAATTTCAACTCATTCATGAGTTATGCTTATATGTACTATCAGCATCTCAAAGAACGGAGCTTATCAGGGCTACACTGGCCACATTGCATGCCTTCCTTTCGTGGATTCCTCTAGGCTATATCTTCGAATCTCCACTGCTGGAGACGCTCCTTAAATTTTTCCCTGTTCCAGCATATCGCAATTCAACCCTTCAGTGTTTGCAAGAGGTTGCGGCCCTTAATTTCGGGGATTTCTATAACGTGCAGTATGTTAAAATGTATAACATATTCATGGTGCAGTTGCAGACCATCCTTCCACCAACTACGAACATACCTGAGGCTTATGCAAATGGTTCTGGTGATGAGCAGTCTCATATTCGCGTGCTAGAATCCTCTCAAGAGAATATATCTGGACTCCTGATGGGTCTTGATTATCTAACGAACATTTCATATGTGGATGATACAGAGGTTTTTAAGGTTTGCTTAGACTATTGGAACTCGTTAGTCCTAGAGCTTTTTGAGGCACACCATAATCTTGATAATCCTGCAGCAACTGCAAACATGATGGGACTCCAGATGCCATTGCTTCCTGGTATGGCCGATGGTCTTGGTTCACAGCTTTTGCAGCGACGACAACTTTATGCTGGTCCAATGTCTAAATTAAGGCTACTTATGATATGCCGTATGGCAAAGCCTGAAGAGGTTCTGATTGTGGAAGATGAAAATGGGAATATTGTCCGTGAAACTCTGAAGGACAATGATGTTCTGGTGCAGTATAAGATCATGCGGGAAACACTTATCTACTTATCTCACCTTGATCATGAGGATACTGAAAAGCAGATGCTGAAGAGATTGAGCAAACAACTGAATGGTGAGGATTGGACCTGGAACAACTTGAACACATTATGCTGGGCAATAGGATCAATATCTGGGTCAATGATGGAAGAGCAGGAGAATAGATTTCTTGTGATGGTGATTCGTGATTTACTAAATCTTTGTGAAATCACAAAAGGGAAGGACAACAAAGCTGTTATTGCTAGTAATATTATGTATGTTGTTGGACAGTATCCAAGATTCTTGAGGGCCCATTGGAAGTTCTTGAAAACTGTTGTCAATAAGCTATTCGAATTCATGCATGAAACACATCCCGGAGTTCAGGATATGGCATGTGACACATTTTTGAAAATTGTTCAAAAGTGCAAGCGGAAGTTTGTTATTATGCAGGTTGGAGAAAGTGAACCATTCGTGTCAGAACTTCTGACTAGTCTTCCAACAACTATAGCAGATCTCGAACCTCATCAGATTCATTCATTTTACGAATCTGTTGGTAATATGATTCAAGCTGAATCAGATCCACAGAAAAGGGATGAATATTTGCAGAGGCTAATGGAGCTTCCAAATCAGAAATGGAATGAGATTATAGGACATGCTCGCCAAAGTGTGGATTTGCTGAAGGATCAACTTGTGATCAAGACTGTGCTTAATATACTGCAGACAAACACGAGTGTTGCCACTTCGCTTGGAACATACTTTTTGCCCCAAATTACTGTCATCTTTTTGGACATGCTTAATGTATACAGAATGTACAGCGAGCTTATATCAGCCACCATTGCAGGTGGAGGGCCTTATGCTTCTAAGACATCTGTTGTAAAACTTTTGCGCTCAGTGAAGAGGGAAACCCTTAAGCTCGTTGAAACATTTCTAGACAAGGCTGAAGACCAACCACAAATTGGAAAGCAATTTGTACCTCCAATGATGGACCCCGTTCTTGGTGACTATGCTCGGAATTTGCCTGATGCAAGGGAATCAGAAGTCTTGTCACTTTTTGCTACGATAATAAACAAGTACAAGGGTGCAATGATAGATGATGTCCCTCGCATATTTGAAGCTGTTTTCCAGTGTACCCTGGAGATGATTACGAAGAACTTTGAAGATTACCCTGAGCATCGGCTCAAGTTCTTTTCATTACTTCGTGCCATTGCTACACATTGTTTCCCTGCTTTGATTCTATTATCAACTGAGCAACTAAAGCTTGTTATGGATTCTATCATATGGGCTTTTCGGCACACTGAAAAGAACATTGCTGAAACTGGCTTGAACCTTTTGTTGGAGATGTTGAAGAACTTTCAGGTTTCCGAGTTCTGTAATCAATTCTACCGCACTTATTTTTTGAACATCGAGCAAGAAATTTTTGCCGTTTTGACAGACACGTTCCATAAACCCGGGTTCAAGTTGCATGTCTTGGTGCTGCAGCACTTATTTTGCTTGGCTGAATCTGGTTCATTGACTGAGCCTTTATGGGATGCATCAACCGTACCTTATCCGTATCCTAATAATGCAATGTTTGTTCGCGAGTACACCATAAAGCTCTTGGGTACGTCGTTCCCCAATATGACTGGGACTGAGGTTACCCAATTTGTGACGGGACTCTTTGAGTCGAGGAATGATCTATCCACGTTCAAGAATCACATACGGGACTTTCTTGTGCAGTCCAAGAAGTTTTCTGCTCAGGATAACAAGGACCTTTATGCCGAAGAAGCAGCTGCACAGAGAGAAAGGGAGAGACAGCGGATGCTTAGTATTCCTGGGCTTATTGCACCCAACGAGATACAAGATGAGATGGTGGACTTGTGA

Network for GWHGAAZE012635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.20	IBN_N	37	102	3.10E-14
PF08389.13	Xpo1	115	258	3.00E-41
PF18777.2	CRM1_repeat	323	357	1.40E-16
PF18784.2	CRM1_repeat_2	394	461	1.40E-30
PF18787.2	CRM1_repeat_3	474	524	2.70E-27
PF08767.12	CRM1_C	698	1019	2.30E-126

Protein Sequence

>GWHPAAZE012642
MAAEKLRDLSQPIDVGLLDATVEAFYGTGSKEERTAADQILRELQNNPDMWLQVVRILSNSQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISDVIVKLSSDEISFRRERLYVNKLNIILVQILKHEWPARWRSFVPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLATLHAFLSWIPLGYIFESPLLETLLKFFPVPAYRNSTLQCLQEVAALNFGDFYNVQYVKMYNIFMVQLQTILPPTTNIPEAYANGSGDEQSHIRVLESSQENISGLLMGLDYLTNISYVDDTEVFKVCLDYWNSLVLELFEAHHNLDNPAATANMMGLQMPLLPGMADGLGSQLLQRRQLYAGPMSKLRLLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKRLSKQLNGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIMQVGESEPFVSELLTSLPTTIADLEPHQIHSFYESVGNMIQAESDPQKRDEYLQRLMELPNQKWNEIIGHARQSVDLLKDQLVIKTVLNILQTNTSVATSLGTYFLPQITVIFLDMLNVYRMYSELISATIAGGGPYASKTSVVKLLRSVKRETLKLVETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNLPDARESEVLSLFATIINKYKGAMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALILLSTEQLKLVMDSIIWAFRHTEKNIAETGLNLLLEMLKNFQVSEFCNQFYRTYFLNIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLAESGSLTEPLWDASTVPYPYPNNAMFVREYTIKLLGTSFPNMTGTEVTQFVTGLFESRNDLSTFKNHIRDFLVQSKKFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14290	XPO1, CRM1	RNA transport	map03013
		Ribosome biogenesis in eukaryotes	map03008
		MAPK signaling pathway - fly	map04013

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0008536	molecular_function	Ran GTPase binding
GO:0005049	molecular_function	nuclear export signal receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.536
	SRR3591706	second leaf	25.894
	SRR3591707	mature leaf	26.533
	SRR3591708	Shoot apex	44.543
	SRR3591709	Stem	32.094
	SRR3591710	White floral bud	32.073
	SRR3591711	White flower	44.937
	SRR3591712	Green floral bud	32.008
	SRR3591713	Yellow flower	32.850
SRP173429	SRR8316895	Juvenile bud stage	25.076
	SRR8316896	Juvenile bud stage	30.755
	SRR8316897	Juvenile bud stage	17.494
	SRR8316894	Third green stage	14.304
	SRR8316900	Third green stage	31.752
	SRR8316901	Third green stage	30.385
	SRR8316898	Complete white stage	8.687
	SRR8316899	Complete white stage	33.392
	SRR8316903	Complete white stage	20.668
	SRR8316902	Silver flowering stage	17.677
	SRR8316904	Silver flowering stage	27.136
	SRR8316905	Silver flowering stage	10.799
	SRR8316906	Gold flowering stage	32.636
	SRR8316907	Gold flowering stage	32.612
	SRR8316908	Gold flowering stage	30.252
SRP132670	SRR6706286	Control	24.685
	SRR6706287	Light intensity 50%	26.873
	SRR6706288	Light intensity 20%	28.309
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.705
	CNS0095593	Slightly white alabastrum(diploid) 2	18.384
	CNS0095594	Slightly white alabastrum(diploid) 3	15.484
	CNS0095595	Whole white alabastrum(diploid) 2	14.698
	CNS0095596	Whole white alabastrum(diploid) 3	10.207
	CNS0095597	Whole white alabastrum(diploid) 4	13.344
	CNS0095598	Silvery flower (diploied) 1	21.410
	CNS0095599	Silvery flower (diploied) 2	19.416
	CNS0095600	Silvery flower (diploied) 3	33.993
	CNS0095601	Golden flower (diploid) 1	17.571
	CNS0095602	Golden flower (diploid) 2	34.109
	CNS0095603	Golden flower (diploid) 3	30.824
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.358
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.502
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.032
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.143
	CNS0095610	Silvery flower (tetraploid) 1	37.382
	CNS0095611	Silvery flower (tetraploid) 2	35.472
	CNS0095612	Silvery flower (tetraploid) 3	33.839
	CNS0095613	Golden flower (tetraploid) 1	17.558
	CNS0095614	Golden flower (tetraploid) 2	29.403
	CNS0095615	Golden flower (tetraploid) 3	29.440
CRA001975	CRR073297	Stem 1	35.700
	CRR073298	Stem 2	26.189
	CRR073299	Stem 3	23.886
	CRR073300	Leaf 1	30.856
	CRR073301	Leaf 2	25.019
	CRR073302	Leaf 3	18.675
	CRR073303	Juvenile bud 1	21.431
	CRR073304	Juvenile bud 2	13.629
	CRR073305	Juvenile bud 3	25.140
	CRR073306	Third green 1	7.291
	CRR073307	Third green 2	6.198
	CRR073308	Third green 3	8.861
	CRR073309	Second white 1	7.022
	CRR073310	Second white 2	13.247
	CRR073311	Second white 3	13.594
	CRR073312	Silver flowering 1	11.733
	CRR073313	Silver flowering 2	11.171
	CRR073314	Silver flowering 3	11.610
	CRR073315	Gold flowering 1	8.948
	CRR073316	Gold flowering 2	15.348
	CRR073317	Gold flowering 3	8.333
	CRR073318	Tawny withering 1	20.687
	CRR073319	Tawny withering 2	22.056
	CRR073320	Tawny withering 3	24.477