Gene detail

Detail information of GWHGAAZE012633

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009351843.1	0	PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Pyrus x bretschneideri]
Swissprot	tr\|Q9LW77\|HRD1A_ARATH	0	ERAD-associated E3 ubiquitin-protein ligase HRD1A {ECO:0000305}
trEMBL	tr\|A0A061GUW0\|A0A061GUW0_THECC	0	RING/U-box superfamily protein {ECO:0000313\|EMBL:EOY33158.1}
TAIR10	AT3G16090.1	7E-170	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88844320	88850906	+
GWHAAZE00000003	mRNA	88844320	88850906	+
GWHAAZE00000003	exon	88844320	88844852	+
GWHAAZE00000003	exon	88845688	88845864	+
GWHAAZE00000003	exon	88847621	88847770	+
GWHAAZE00000003	exon	88847860	88848056	+
GWHAAZE00000003	exon	88849192	88849351	+
GWHAAZE00000003	exon	88850305	88850581	+
GWHAAZE00000003	exon	88850751	88850906	+
GWHAAZE00000003	CDS	88844320	88844852	+
GWHAAZE00000003	CDS	88845688	88845864	+
GWHAAZE00000003	CDS	88847621	88847770	+
GWHAAZE00000003	CDS	88847860	88848056	+
GWHAAZE00000003	CDS	88849192	88849351	+
GWHAAZE00000003	CDS	88850305	88850581	+
GWHAAZE00000003	CDS	88850751	88850906	+

Transcript Sequence
>GWHTAAZE012647 ATGATGAAGCTGCAAACTTATGCGGGTTTGAGTTTGGTTGCTACATTAACTGTTATTTATCATGCCTTTAGTAGTAGAGGCCAGTTCTACCCAGCAATGGTTCATTTATCTACCTCAAAGGTCAGCTTGGTGCTTCTTCTCAACATGGGTCTGGTCATTATGTGCATTTTGTGGCAGCTAACAAAGAAAATATTTCTTGGATCACTCCGAGAGGCCGAGGTCGAGAGGCTGAATGAGCAATCATGGCGGGAAGTAATGGAAATTCTTTTTGCAATCACTATATTCCGTCAAGACTTTTCAGTTACATTTCTTGCTATGGTTACCGCCCTTCTATTAATCAAGGCTTTGCATTGGTTGGCTCAAAAGCGGGTTGAGTACATTGAAACAACTCCAACTGTACCCATGTTGTCTCACATCAGAATAGTTTCTTTTATGGGGTTCCTTCTCCTTCTAGATAGCCTCTTTCTGTACAATTCTGTAAAGTATTTGATACAAACGCGGCAGGCTTCGGTGTCTCTCTTCTTTTCGTTTGAGTACATGATACTGGCGACAACTACAGTGTCAACATTTGTTAAATATATCTTCTATGTCAGTGACATGCTTATGGAAGGGCAATGGGAAAAAAAGGCCGTATACACATTCTATCTGGAACTTATTCGTGACTTGCTGCACTTGTCTATGTATATGTGCTTCTTCCTTGTGATTTTCATGAACTACGGTGTGCCTTTGCACTTGATTCGAGAGCTTTATGAAACCTTCCGTAACTTTAAGGTCCGCATTGCCGATTACATTCGTTATCGGAAGATTACTTCGAACATGAACGACCGTTTCCCAGATGCTACACCTGAAGAAATTGATGCAAGCGATGCAACCTGCATTATCTGTCGTGAGGAGATGACTACAGCTAAGAAACTCATTTGTGGTCATCTTTTTCATGTGCATTGCCTTCGTTCTTGGTTAGAGAGGCAACACACTTGTCCTACTTGCAGGGCCCTTGTTGTACCATCTGAAAATGGGCCAAATACTGCTGGATTGAGAGCCGATGTTCATCAACAAGGAGCAAGCACGGCAAGTAGTACATCTGCTCAGGGTTCAACTGGTGAGGGTGCAGCAAGTGGGAATATGAGCCAGCATCAGGCCAGGCTTCGAGCTGCTGCTGCTGCTGCTGCAGTATATGAGAAGTCATATGTTTACCCTTCTGCAAGTACACTAGCTTGGTCCCCTGGGTATGCTGTAGTACCTCAAACATACAGAACCCCAGGTGAGCCTGTTAACACAGATAATGGTGAAGGAACTTCGAGTGGACAGTCACAAGAACATCATCAGTTTTCATTCCCTGGAGTGACCACAAACTTGCCTTTCGCGCAGTTCTCACACTCTGCATTCATCCCTGGTTCCAACACAAACTACGGAGAGTTATTAAGCAGCAATCTAAGCATGATACCAGACTCTCAATTAGAGACTCAGAAAAAAATTCTTCAGCATCAGATTGAGGTCTTGCAAAAACAGCTCCAACTTCTACAGAAGCCAAGTCTGGAGAAAAGTGCGGATGTGGGCCCCACAGAAGCTTCTGATAGCAAGGGAAAGTCAGTTTCAACGTCAGCCTCATCCATCTCAGATTGCGGCCAACATGGAGAGAGAGATACGTAG

Network for GWHGAAZE012633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	291	330	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10601	SYVN1, HRD1	Protein processing in endoplasmic reticulum	map04141
K10601	SYVN1, HRD1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.635
	SRR3591706	second leaf	43.189
	SRR3591707	mature leaf	52.803
	SRR3591708	Shoot apex	46.147
	SRR3591709	Stem	49.981
	SRR3591710	White floral bud	73.145
	SRR3591711	White flower	74.052
	SRR3591712	Green floral bud	55.183
	SRR3591713	Yellow flower	93.932
SRP173429	SRR8316895	Juvenile bud stage	29.002
	SRR8316896	Juvenile bud stage	39.449
	SRR8316897	Juvenile bud stage	20.535
	SRR8316894	Third green stage	16.505
	SRR8316900	Third green stage	54.359
	SRR8316901	Third green stage	50.046
	SRR8316898	Complete white stage	35.322
	SRR8316899	Complete white stage	74.274
	SRR8316903	Complete white stage	53.635
	SRR8316902	Silver flowering stage	37.408
	SRR8316904	Silver flowering stage	54.057
	SRR8316905	Silver flowering stage	23.679
	SRR8316906	Gold flowering stage	98.782
	SRR8316907	Gold flowering stage	78.373
	SRR8316908	Gold flowering stage	80.225
SRP132670	SRR6706286	Control	40.331
	SRR6706287	Light intensity 50%	39.091
	SRR6706288	Light intensity 20%	40.073
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.823
	CNS0095593	Slightly white alabastrum(diploid) 2	30.941
	CNS0095594	Slightly white alabastrum(diploid) 3	29.480
	CNS0095595	Whole white alabastrum(diploid) 2	32.274
	CNS0095596	Whole white alabastrum(diploid) 3	28.635
	CNS0095597	Whole white alabastrum(diploid) 4	32.889
	CNS0095598	Silvery flower (diploied) 1	50.567
	CNS0095599	Silvery flower (diploied) 2	41.207
	CNS0095600	Silvery flower (diploied) 3	78.886
	CNS0095601	Golden flower (diploid) 1	44.116
	CNS0095602	Golden flower (diploid) 2	100.847
	CNS0095603	Golden flower (diploid) 3	99.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.064
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.193
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.528
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.262
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.515
	CNS0095610	Silvery flower (tetraploid) 1	79.412
	CNS0095611	Silvery flower (tetraploid) 2	77.171
	CNS0095612	Silvery flower (tetraploid) 3	64.537
	CNS0095613	Golden flower (tetraploid) 1	55.482
	CNS0095614	Golden flower (tetraploid) 2	75.145
	CNS0095615	Golden flower (tetraploid) 3	109.835
CRA001975	CRR073297	Stem 1	57.885
	CRR073298	Stem 2	53.186
	CRR073299	Stem 3	57.400
	CRR073300	Leaf 1	64.308
	CRR073301	Leaf 2	57.714
	CRR073302	Leaf 3	55.651
	CRR073303	Juvenile bud 1	67.798
	CRR073304	Juvenile bud 2	59.015
	CRR073305	Juvenile bud 3	74.621
	CRR073306	Third green 1	48.816
	CRR073307	Third green 2	39.911
	CRR073308	Third green 3	48.023
	CRR073309	Second white 1	76.856
	CRR073310	Second white 2	65.485
	CRR073311	Second white 3	73.350
	CRR073312	Silver flowering 1	119.317
	CRR073313	Silver flowering 2	155.462
	CRR073314	Silver flowering 3	122.908
	CRR073315	Gold flowering 1	51.692
	CRR073316	Gold flowering 2	56.181
	CRR073317	Gold flowering 3	63.774
	CRR073318	Tawny withering 1	63.155
	CRR073319	Tawny withering 2	50.276
	CRR073320	Tawny withering 3	63.029