Gene detail

Detail information of GWHGAAZE012623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272637.1	1.65664E-73	PREDICTED: probable transcription factor KAN2 [Vitis vinifera]
Swissprot	tr\|Q93WJ9\|KAN1_ARATH	1E-42	Transcription repressor KAN1
trEMBL	tr\|F6HEF0\|F6HEF0_VITVI	5E-74	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50596.1}
TAIR10	AT1G32240.1	2E-28	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88674906	88679707	+
GWHAAZE00000003	mRNA	88674906	88679707	+
GWHAAZE00000003	exon	88674906	88675443	+
GWHAAZE00000003	exon	88675614	88675690	+
GWHAAZE00000003	exon	88677670	88677715	+
GWHAAZE00000003	exon	88677832	88677907	+
GWHAAZE00000003	exon	88679558	88679618	+
GWHAAZE00000003	exon	88679705	88679707	+
GWHAAZE00000003	CDS	88674906	88675443	+
GWHAAZE00000003	CDS	88675614	88675690	+
GWHAAZE00000003	CDS	88677670	88677715	+
GWHAAZE00000003	CDS	88677832	88677907	+
GWHAAZE00000003	CDS	88679558	88679618	+
GWHAAZE00000003	CDS	88679705	88679707	+

Transcript Sequence
>GWHTAAZE012637 ATGGAGTTTTTTCAACCACAACCAGATTTATCTCTTCAAATTAGCCCACCAAACACAAAACCCACCTCAACTTTTACAAAAACAGATCAAAACAAGGGTTTGGGCCATTGGATAATGCATATGGACCCTATCAAAACAACCCCTTTCGACCCCGCCCTCTCAAACAACCAAAACCCTAACTCTCACCTCTTTCGTCACAAGAACAACAATTTTTTACCACCAAATGACGTATATAATTACCAAACCCACCAATTTCAATTTCATCATCAACAACAAAAACAAGGGCCTCCTCAAGAATTTGATTACTTAAGACCCATCAAGGGCATTCCTATTTACCAAAACCCTCGTCCTCTCTCTTTTACTAGTATTAATTATAGTAATACTTCAACAAATAATATTTCTCCCTCCTCCTTTGAGAGATCAAGATTTCTTTCAAGATTTCCAAGAAGGCGGAGCGTTAGGGCACCTCGGATGAGATGGACTACAACACTACACGGGCAATTCGTTCATGCTGTTGAATTATTGGGTGGCCATGAAAGAGCAACACCCAAGTCAGTTCTTGAGCTCATGGATATCAAGGATCTCACCTTATCACATGTTAAATCTCATTTACAGATGTATCGAACAATAAAGACCACTGATAGAACTGCAATTTCTTCAGATGGATTTGAAAGCGATTTAATTGGTGAGAATTCTGATCAAGATCACAATGGCCTCTCCAGCAGCAATTCATCAAGGGATGGTGGTTTGCATGGAAAGACAAGTGACACTAAAGGGGAGGAAAGCCCTTCTTTTGAGTGA

Network for GWHGAAZE012623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.061
	SRR3591706	second leaf	3.813
	SRR3591707	mature leaf	10.266
	SRR3591708	Shoot apex	8.102
	SRR3591709	Stem	18.594
	SRR3591710	White floral bud	11.828
	SRR3591711	White flower	7.562
	SRR3591712	Green floral bud	13.060
	SRR3591713	Yellow flower	2.809
SRP173429	SRR8316895	Juvenile bud stage	6.433
	SRR8316896	Juvenile bud stage	8.671
	SRR8316897	Juvenile bud stage	3.894
	SRR8316894	Third green stage	3.913
	SRR8316900	Third green stage	13.362
	SRR8316901	Third green stage	8.661
	SRR8316898	Complete white stage	1.465
	SRR8316899	Complete white stage	12.954
	SRR8316903	Complete white stage	5.837
	SRR8316902	Silver flowering stage	1.166
	SRR8316904	Silver flowering stage	1.633
	SRR8316905	Silver flowering stage	0.538
	SRR8316906	Gold flowering stage	0.331
	SRR8316907	Gold flowering stage	1.861
	SRR8316908	Gold flowering stage	1.129
SRP132670	SRR6706286	Control	8.971
	SRR6706287	Light intensity 50%	7.438
	SRR6706288	Light intensity 20%	8.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.317
	CNS0095593	Slightly white alabastrum(diploid) 2	6.292
	CNS0095594	Slightly white alabastrum(diploid) 3	8.541
	CNS0095595	Whole white alabastrum(diploid) 2	3.790
	CNS0095596	Whole white alabastrum(diploid) 3	3.920
	CNS0095597	Whole white alabastrum(diploid) 4	6.988
	CNS0095598	Silvery flower (diploied) 1	2.807
	CNS0095599	Silvery flower (diploied) 2	2.196
	CNS0095600	Silvery flower (diploied) 3	2.760
	CNS0095601	Golden flower (diploid) 1	0.685
	CNS0095602	Golden flower (diploid) 2	2.274
	CNS0095603	Golden flower (diploid) 3	1.899
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.196
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.304
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.765
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.686
	CNS0095610	Silvery flower (tetraploid) 1	2.486
	CNS0095611	Silvery flower (tetraploid) 2	1.107
	CNS0095612	Silvery flower (tetraploid) 3	1.176
	CNS0095613	Golden flower (tetraploid) 1	1.441
	CNS0095614	Golden flower (tetraploid) 2	2.732
	CNS0095615	Golden flower (tetraploid) 3	0.558
CRA001975	CRR073297	Stem 1	6.939
	CRR073298	Stem 2	10.390
	CRR073299	Stem 3	5.036
	CRR073300	Leaf 1	5.365
	CRR073301	Leaf 2	6.322
	CRR073302	Leaf 3	3.535
	CRR073303	Juvenile bud 1	3.949
	CRR073304	Juvenile bud 2	3.666
	CRR073305	Juvenile bud 3	4.831
	CRR073306	Third green 1	1.321
	CRR073307	Third green 2	0.908
	CRR073308	Third green 3	1.847
	CRR073309	Second white 1	0.268
	CRR073310	Second white 2	0.289
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.194
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.161
	CRR073315	Gold flowering 1	0.394
	CRR073316	Gold flowering 2	0.760
	CRR073317	Gold flowering 3	0.282
	CRR073318	Tawny withering 1	5.514
	CRR073319	Tawny withering 2	4.421
	CRR073320	Tawny withering 3	5.702