Gene detail

Detail information of GWHGAAZE012595

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011041028.1	PREDICTED: transketolase, chloroplastic-like [Populus euphratica]
Swissprot	tr\|Q8RWV0\|TKTC1_ARATH	Transketolase-1, chloroplastic (Precursor)
trEMBL	tr\|A0A068TTZ6\|A0A068TTZ6_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99755.1}
TAIR10	AT3G60750.1	Transketolase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88213683	88218798	-
GWHAAZE00000003	mRNA	88213683	88218798	-
GWHAAZE00000003	exon	88218200	88218798	-
GWHAAZE00000003	exon	88217364	88217454	-
GWHAAZE00000003	exon	88216973	88217078	-
GWHAAZE00000003	exon	88216329	88216611	-
GWHAAZE00000003	exon	88215832	88215980	-
GWHAAZE00000003	exon	88215378	88215531	-
GWHAAZE00000003	exon	88213683	88214669	-
GWHAAZE00000003	five_prime_UTR	88218749	88218798	-
GWHAAZE00000003	CDS	88218200	88218748	-
GWHAAZE00000003	CDS	88217364	88217454	-
GWHAAZE00000003	CDS	88216973	88217078	-
GWHAAZE00000003	CDS	88216329	88216611	-
GWHAAZE00000003	CDS	88215832	88215980	-
GWHAAZE00000003	CDS	88215378	88215531	-
GWHAAZE00000003	CDS	88213683	88214669	-

Transcript Sequence
>GWHTAAZE012609 AACCCCAATCAAATCAATCATCGCCCTACGTGGATCTCACAGCAATCACCATGTTAAGACTTAACCAACCACCGCACCCACTCTCTCTCCACCACCACCGGAAAATGGCTATCACCAGCCCCCTCCTCCGCCCCTTCCCCCCTCATCTCCTCTCCACAACCCAAACCAAACAAAATTACAAAACCTTCAAAATTCACAACACCAGCAGCAACCTCAACAAAAACCCGGCCCCGCCAGTACTTCTCTCCTCGTGGAAAAAAGAGCTCAAAATAGCATTCTTGGAGCCCGAGACCCGAAAACTCGAACAACAGTTTCATGATGACGATGAGGAGGAGGACTACTTTGAAGAATTGATAGATAAAAGGTGTGTGGATAATGTGAGGATGCTGATTGTGGACTCGGTGCAGCAAGCTCAAGCAGGGCACCCGGGGATGGCGCTCGGGATGGCTGAAGTTGGGTACTTGTTGTATAGGAGAGTGATGAGGTATAATCCAAAGAACCCAAAGTGGTTTAATAGAGATAGGTTTGTTTTGAGTGCAGGCCATGGCTGTCTCCTTCAATATGTTTGCCTTTATCTTTCTGGCTTCCAATCTGTCCAGGTTGAAGACCTGCAACGCTTATGCAAGCTAGGGAGTAGGACCCCGGGACATCCTGAGAATGTGGTGACTGAAGGCATCGAAGTCACAACTGGGCCCCTTGGACAAGGTGTCGCAAATGCAGTTGGTCTCGCCCTAGCAGAGGCTCACTTAGCTGCTAGGTTCAATAAACCCGATGTTGTTGTCGTTGATCACCGAACATACTGCATTATGGGTGATGGGTGTGCCATGGAAGGCATAGCACATGAAGCTGCATCTCTAGCTGCGCATTGGAAACTGAACAAGCTAACACTTATTTATGACGATAACCATAACACCATTGATGGAGACACAGCCCTTGCCTTTTCTGAAGATATATCAGTGCGATTCGAGGCGCTTGGTTGGAATACAATCACAGTGGATGATATACACAGTAACATTGGATCATTCAAGAATGCACTTCTCTCTGCCTTTAAAGAAACCGAGAAACCAACTTTCATCAGGGTGAAGACACTCATAGGGAGATTGTCCAAGAAGGAAGGAACATCTAAAGCTCATCATGGTACCTTTGACGAAGATGATGTAATTAAGATGAGAGAAAAAGTCAAGTGGGGTGACCGAGAACCATTTTATGTCATTCCAATGATTCGTGAGGAAATGCAAGTCCATGCTGACCACGGGGAAAGATTGGAAAGGCAGTGGCACTCTAAATTCAATTATTTCAAAAGCAGATACCCAGAAGAAGCTTCAGAATTTGAAGTTCTCCTTAATGCTGGTGTCCCTCCAGGGTGGGAAAGCATATTACCGAAGTGGTCAACATCTGATCCGGTGGATGCCACTCGAGGATATTCTGAGAAATGCTTAAACCAGCTTGCTAAAGTTCTCCCGGGGTTAATCGGGGGTAGTGCAGATCTAGCATCCTCTAACAAAGCCTATCTCCACGAATACGAAGATTTCTGCCGCAACACTCCATGGGGACGCAACATCCGTTACGGAGTCCGCGAGCACGCAATGGCAGGAATATCGAACGGTCTCGCACTACACAGGAGCGGTTTAATACCTTTTGCAGCCACTTTTCTAATCTTCTCCGATTACATGAAGAACTCCATCCGCCTCTCGGCCTTAAGTCAAGCCGGAGTCATCTACATTATGACCCACGACTCGATTGGTCTAGGCGAGGATGGGCCAACCCACCAACCAGTCGAACAGCTCACTGGCCTACGAGCGGTGCCTCACCTTCTAGTTTTCCGACCAGCAGATGGGAATGAGACCGCCGGAGCGTACAGAGTTGCAATTTCCAACCGAAATATACCGAGTCTTATTGCGTTGTCAAGGCAAAAGGTGGCGGCGAATTTGGAAGGAACTTCGGCCGATGGGGTTGAAAGAGGCGGTTATATTGTGAGCGACAACTCTGGCGAGGAACCACCGGAGATAATATTGATTGGGACAGGATCGGAACTCTGTATTTGCGAAGAGAGTGCTAGTGTCTTGAGGGGAGAAGGGAGGAGAGTGAGGGTGGTTTCGCTGGTTTGTTGGAGGCTTTTCGACAAGCAAGGTAGGGAGTATAAGGAGTGTGTGTTGCCTTCGAGTGTGTCAAAGCGAGTGAGCGTTGAGGCCGGTTCGCCCCTCGGGTGGAGGGAGTATGTGGGAGGGGAAGGTAAGATTGTTTGTGTGGAGGATTTTGGGAGTAGTGGGGATTATTTGGATACATTCAAGAAGTTTGGTTTTATTCAAGAGAATGTGACACGGATAGCAAGGTCACTACTACAATAATAATAATAATAATAAAAGGAT

Network for GWHGAAZE012595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00456.22	Transketolase_N	102	436	7.50E-120
PF02779.25	Transket_pyr	455	623	1.40E-39
PF02780.21	Transketolase_C	650	755	4.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00615	E2.2.1.1, tktA, tktB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Carbon fixation in photosynthetic organisms	map00710
		Biosynthesis of ansamycins	map01051

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0004802	molecular_function	transketolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.110
	SRR3591709	Stem	0.057
	SRR3591710	White floral bud	0.327
	SRR3591711	White flower	0.569
	SRR3591712	Green floral bud	0.581
	SRR3591713	Yellow flower	1.260
SRP173429	SRR8316895	Juvenile bud stage	1.130
	SRR8316896	Juvenile bud stage	6.890
	SRR8316897	Juvenile bud stage	3.193
	SRR8316894	Third green stage	1.343
	SRR8316900	Third green stage	0.551
	SRR8316901	Third green stage	1.040
	SRR8316898	Complete white stage	0.291
	SRR8316899	Complete white stage	0.433
	SRR8316903	Complete white stage	0.317
	SRR8316902	Silver flowering stage	0.720
	SRR8316904	Silver flowering stage	0.311
	SRR8316905	Silver flowering stage	0.093
	SRR8316906	Gold flowering stage	0.153
	SRR8316907	Gold flowering stage	0.288
	SRR8316908	Gold flowering stage	0.248
SRP132670	SRR6706286	Control	1.006
	SRR6706287	Light intensity 50%	0.727
	SRR6706288	Light intensity 20%	0.736
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.688
	CNS0095593	Slightly white alabastrum(diploid) 2	1.451
	CNS0095594	Slightly white alabastrum(diploid) 3	5.070
	CNS0095595	Whole white alabastrum(diploid) 2	0.827
	CNS0095596	Whole white alabastrum(diploid) 3	1.263
	CNS0095597	Whole white alabastrum(diploid) 4	0.483
	CNS0095598	Silvery flower (diploied) 1	0.386
	CNS0095599	Silvery flower (diploied) 2	0.358
	CNS0095600	Silvery flower (diploied) 3	0.943
	CNS0095601	Golden flower (diploid) 1	0.617
	CNS0095602	Golden flower (diploid) 2	1.998
	CNS0095603	Golden flower (diploid) 3	2.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.526
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.610
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.474
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.768
	CNS0095610	Silvery flower (tetraploid) 1	4.743
	CNS0095611	Silvery flower (tetraploid) 2	3.740
	CNS0095612	Silvery flower (tetraploid) 3	2.398
	CNS0095613	Golden flower (tetraploid) 1	1.477
	CNS0095614	Golden flower (tetraploid) 2	3.730
	CNS0095615	Golden flower (tetraploid) 3	0.335
CRA001975	CRR073297	Stem 1	2.066
	CRR073298	Stem 2	1.971
	CRR073299	Stem 3	1.191
	CRR073300	Leaf 1	0.550
	CRR073301	Leaf 2	0.629
	CRR073302	Leaf 3	0.413
	CRR073303	Juvenile bud 1	0.493
	CRR073304	Juvenile bud 2	0.595
	CRR073305	Juvenile bud 3	0.442
	CRR073306	Third green 1	0.260
	CRR073307	Third green 2	0.546
	CRR073308	Third green 3	0.476
	CRR073309	Second white 1	0.176
	CRR073310	Second white 2	0.232
	CRR073311	Second white 3	0.125
	CRR073312	Silver flowering 1	0.588
	CRR073313	Silver flowering 2	0.224
	CRR073314	Silver flowering 3	0.908
	CRR073315	Gold flowering 1	0.055
	CRR073316	Gold flowering 2	0.080
	CRR073317	Gold flowering 3	0.048
	CRR073318	Tawny withering 1	4.319
	CRR073319	Tawny withering 2	2.384
	CRR073320	Tawny withering 3	0.799