Gene detail

Detail information of GWHGAAZE012593

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002315314.2	1.0866E-166	hypothetical protein POPTR_0010s23180g [Populus trichocarpa]
Swissprot	tr\|F4IB81\|LYK3_ARATH	9E-42	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|B9HUH6\|B9HUH6_POPTR	4E-167	Uncharacterized protein {ECO:0000313\|EMBL:EEF01485.2}
TAIR10	AT3G57120.1	6E-116	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88205728	88206980	-
GWHAAZE00000003	mRNA	88205728	88206980	-
GWHAAZE00000003	exon	88206212	88206980	-
GWHAAZE00000003	exon	88205728	88206173	-
GWHAAZE00000003	CDS	88206212	88206980	-
GWHAAZE00000003	CDS	88205728	88206173	-

Transcript Sequence
>GWHTAAZE012607 ATGTGTAAAACGAAGAAGATGATCACAGACGTGATTGACCCCTCCAGTTCACCATTCTCAATCCCAAGAAAAAGCTCCCAAGGAAATCGATACTCCTTCAATCCTTCTTCAATTACCACTAATTCTGCCTCCACGACAAGCTCAAGCTACAACTACTACAACGATTCATCATCCAGGTCCTCAGTTTCACGCCGCACCTCACTCTCTAGCCTCCGCGATTCATTGCCATCCGATCAAGGCGGCTGCATCTACGATTTCTCCGAGATCTGCTCCGCCACTAACAACTTCTCCACCAAACAACGCCACTCCTCCTCCTCTTCCTCCGTCTCCTGGCGCTGCAATCTCCGCGCCCACGACGTCATCGTCTTCCAGCGGAAGCTCCGCCGTTCGATCAACTTGTCCGACCTCCGGGACAAGCTCTCGTTCATCTGCAAGAGCCATTACACCAGCTTGATCAAGCTCAAAGGCGCTTCCATCTCCGGAAACTATGTCTACCTCGTATATGATTTCGTTCAAGGTGCTAATCTCGCTAGTTGTTTGCGCAACCCTAGAAACCCTAATTTTACGGTTCTGTCCAACTGGATGTCTCGAATTCAGATTGCCACAGACATCGCTCACGGACTAGATTACATCCATAATTCTGCTGGACTCAAATTAAGTTTTGTGCACAATCATATCAAGAGCACCAGCATAATAATAACCGAGCCATCATTGAACGCCAGAATCTGCCATTTTGGTACGGCGGAGCTTTGCGGCGAGATTGTTAAAGATAGTAAATTTATGAAAGTGGAAGGTACGAGAGGGTACATGTCGCCGGAGTATCAGTCGACTGGACTGGCTGATCAGAGATCCGACGTCTACGCGTTCGGGATCGTGATATTGGAGCTTTTATCAGGGGAAGAGCCTTTGAAGTATAGATTTGACGATGAAGGCGGAGGGTATGTGAGGACATCGGTGATAGAGACGGCGAGAGTGGCGGTGGAAGGTGGCGGGTTGAGGCGGTGGGTCGACAAGAGGTTGAAGGATTCGTACCCAGTTGAGGTAGCGGAGAAGTTGACACGTGTGGGATTGGAGTGCGTGGAGGAGGATCCGGAGAAGAGGCCCGGTATGGGTCTGGTTTCGGGTCGGGTTTCGAAGCTTTATTTGGAGTCCCAAACATGGGCAGAGAAAATGGGTGTGCCCACTGACTTCACTGTCTCTTTGGCACCTCGATGA

Network for GWHGAAZE012593

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	136	370	2.30E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.641
	SRR3591706	second leaf	0.401
	SRR3591707	mature leaf	1.221
	SRR3591708	Shoot apex	0.800
	SRR3591709	Stem	4.061
	SRR3591710	White floral bud	3.645
	SRR3591711	White flower	5.231
	SRR3591712	Green floral bud	2.178
	SRR3591713	Yellow flower	7.799
SRP173429	SRR8316895	Juvenile bud stage	1.135
	SRR8316896	Juvenile bud stage	1.764
	SRR8316897	Juvenile bud stage	0.632
	SRR8316894	Third green stage	0.452
	SRR8316900	Third green stage	1.460
	SRR8316901	Third green stage	1.620
	SRR8316898	Complete white stage	2.107
	SRR8316899	Complete white stage	3.041
	SRR8316903	Complete white stage	3.020
	SRR8316902	Silver flowering stage	1.250
	SRR8316904	Silver flowering stage	2.214
	SRR8316905	Silver flowering stage	1.486
	SRR8316906	Gold flowering stage	3.450
	SRR8316907	Gold flowering stage	3.199
	SRR8316908	Gold flowering stage	1.262
SRP132670	SRR6706286	Control	3.138
	SRR6706287	Light intensity 50%	3.788
	SRR6706288	Light intensity 20%	2.905
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.404
	CNS0095593	Slightly white alabastrum(diploid) 2	1.734
	CNS0095594	Slightly white alabastrum(diploid) 3	2.980
	CNS0095595	Whole white alabastrum(diploid) 2	1.735
	CNS0095596	Whole white alabastrum(diploid) 3	2.195
	CNS0095597	Whole white alabastrum(diploid) 4	1.885
	CNS0095598	Silvery flower (diploied) 1	2.673
	CNS0095599	Silvery flower (diploied) 2	1.231
	CNS0095600	Silvery flower (diploied) 3	5.006
	CNS0095601	Golden flower (diploid) 1	2.070
	CNS0095602	Golden flower (diploid) 2	4.859
	CNS0095603	Golden flower (diploid) 3	4.986
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.769
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.618
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.586
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.638
	CNS0095610	Silvery flower (tetraploid) 1	1.697
	CNS0095611	Silvery flower (tetraploid) 2	2.255
	CNS0095612	Silvery flower (tetraploid) 3	3.490
	CNS0095613	Golden flower (tetraploid) 1	1.746
	CNS0095614	Golden flower (tetraploid) 2	1.894
	CNS0095615	Golden flower (tetraploid) 3	1.133
CRA001975	CRR073297	Stem 1	5.533
	CRR073298	Stem 2	4.304
	CRR073299	Stem 3	4.515
	CRR073300	Leaf 1	3.862
	CRR073301	Leaf 2	3.284
	CRR073302	Leaf 3	3.557
	CRR073303	Juvenile bud 1	3.749
	CRR073304	Juvenile bud 2	2.514
	CRR073305	Juvenile bud 3	4.568
	CRR073306	Third green 1	4.443
	CRR073307	Third green 2	6.238
	CRR073308	Third green 3	4.005
	CRR073309	Second white 1	10.083
	CRR073310	Second white 2	7.724
	CRR073311	Second white 3	7.627
	CRR073312	Silver flowering 1	12.359
	CRR073313	Silver flowering 2	9.795
	CRR073314	Silver flowering 3	10.482
	CRR073315	Gold flowering 1	0.961
	CRR073316	Gold flowering 2	1.884
	CRR073317	Gold flowering 3	1.014
	CRR073318	Tawny withering 1	3.131
	CRR073319	Tawny withering 2	2.498
	CRR073320	Tawny withering 3	2.646