Gene detail

Detail information of GWHGAAZE012591

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010658387.1	0	PREDICTED: probable receptor-like protein kinase At5g47070 [Vitis vinifera]
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	2E-82	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|F6HNE2\|F6HNE2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56161.1}
TAIR10	AT2G39110.1	4E-108	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88173900	88176973	-
GWHAAZE00000003	mRNA	88173900	88176973	-
GWHAAZE00000003	exon	88173900	88174418	-
GWHAAZE00000003	exon	88174819	88174941	-
GWHAAZE00000003	exon	88175966	88176075	-
GWHAAZE00000003	exon	88176203	88176226	-
GWHAAZE00000003	exon	88176550	88176973	-
GWHAAZE00000003	CDS	88176550	88176973	-
GWHAAZE00000003	CDS	88176203	88176226	-
GWHAAZE00000003	CDS	88175966	88176075	-
GWHAAZE00000003	CDS	88174819	88174941	-
GWHAAZE00000003	CDS	88173900	88174418	-

Transcript Sequence
>GWHTAAZE012605 ATGAAGTGTTTCACATGCTCCAATGGAGCTAAAACCGAAGATGAACCGAAGACTACAAAATCAATTTCGGTTCAATCCTCTACTTCCGTCTCAACTGATCATGAAGTGAGGAAATCTGGGTCGGAATTCAATTCACAAGATGTCTCAGACATAAGCGTTGAATCGTCTTCAAGAATCTCGTTCCCAAGTTTTTCTTTAAGACCAAGTAATCTAAGAGTCTTTACAACTACAGAGCTGAAGACAGCCACAAGAAATTTCAGCCGAGCCCTTATGATTGGAGAAGGCGGTTTTGGAGGTGTATATAGGGGTGTGATTCGGAATGCAGAAAATACAAATAAAAAGATTGACATAGCTGTTAAACAACTAAGCAAGAGAGGCTTGCAGGCAAGGTTTCTTTCTTCTTGGTATTTGAATTCGAGGAATGGGACACAAGGAATGGGTGACAGAAATCATTTATCTAGTCGAATTCAGACTCCTATCCCATGGACTACGAGACTTAAAATAGCCCAGGATGCTGCTCGAGGCTTGGCATACCTTCATGAAGGAATGGATTTTCAGATTATCTTCAGAGATTTCAAATCTTCAAACATTCTCTTGGACGATCAATGGACTGCAAAGCTTTCTGATTTTGGATTGGCCAGGTTAGGACCTACAGATGGACTAAGCCATGTCTCAACTGCGGTTGTTGGAACTGTGGGATATGCGGCACCCGAGTACATCCAAACCGGGCGCCTCACGTCCAAGAGTGATGTGTGGAGCTACGGTGTCTTCCTCTATGAACTCATAACAGGCAGGCGGCCTTTGGACCGTTACCGGCCCAAAAGCGAGCAAAAGCTTTTGGACTGGGTGAAGCCACACCTCTCCGACCCAAAGAAGTTCGAGCTGATTTTGGACCCTCGGCTTGGCGGCAACTATTCCCTCAAGTCCGCCCAAAAGCTAGCTGCTATAGCGAACAGGTGCTTGTTACGGCACTCAAAACCACGCCCTAAAATGAGTGAAGTCTTGGATATGGTGAGCCTTATTGTGGAGGATGTCGGCTTTGGAAGCCCTCAAGTTGCAATCAATATTTTGAGTTCGAAACATGAAGGTGAAAAGTCCATTAGAGAAGGGTTGAAGAGAAGGTTTGTGGATCCTCTAATGGGAGAAACCAGATGGTTGGTGTGGCGAACATGGCGGCCTAAGCTTGTGAAGACTAATTAA

Network for GWHGAAZE012591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	160	336	1.30E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.910
	SRR3591706	second leaf	0.715
	SRR3591707	mature leaf	2.416
	SRR3591708	Shoot apex	0.884
	SRR3591709	Stem	2.068
	SRR3591710	White floral bud	5.285
	SRR3591711	White flower	2.901
	SRR3591712	Green floral bud	0.371
	SRR3591713	Yellow flower	1.718
SRP173429	SRR8316895	Juvenile bud stage	0.535
	SRR8316896	Juvenile bud stage	0.274
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.153
	SRR8316900	Third green stage	0.322
	SRR8316901	Third green stage	0.244
	SRR8316898	Complete white stage	0.288
	SRR8316899	Complete white stage	0.673
	SRR8316903	Complete white stage	0.646
	SRR8316902	Silver flowering stage	0.575
	SRR8316904	Silver flowering stage	1.478
	SRR8316905	Silver flowering stage	0.904
	SRR8316906	Gold flowering stage	4.213
	SRR8316907	Gold flowering stage	2.477
	SRR8316908	Gold flowering stage	5.495
SRP132670	SRR6706286	Control	0.642
	SRR6706287	Light intensity 50%	0.592
	SRR6706288	Light intensity 20%	0.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.576
	CNS0095593	Slightly white alabastrum(diploid) 2	0.204
	CNS0095594	Slightly white alabastrum(diploid) 3	0.274
	CNS0095595	Whole white alabastrum(diploid) 2	0.055
	CNS0095596	Whole white alabastrum(diploid) 3	0.115
	CNS0095597	Whole white alabastrum(diploid) 4	0.507
	CNS0095598	Silvery flower (diploied) 1	0.514
	CNS0095599	Silvery flower (diploied) 2	0.219
	CNS0095600	Silvery flower (diploied) 3	1.171
	CNS0095601	Golden flower (diploid) 1	0.765
	CNS0095602	Golden flower (diploid) 2	0.883
	CNS0095603	Golden flower (diploid) 3	0.603
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.284
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.095
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.618
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.190
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.385
	CNS0095610	Silvery flower (tetraploid) 1	1.034
	CNS0095611	Silvery flower (tetraploid) 2	1.292
	CNS0095612	Silvery flower (tetraploid) 3	3.201
	CNS0095613	Golden flower (tetraploid) 1	1.479
	CNS0095614	Golden flower (tetraploid) 2	1.639
	CNS0095615	Golden flower (tetraploid) 3	1.247
CRA001975	CRR073297	Stem 1	0.411
	CRR073298	Stem 2	0.230
	CRR073299	Stem 3	0.418
	CRR073300	Leaf 1	0.396
	CRR073301	Leaf 2	0.388
	CRR073302	Leaf 3	0.265
	CRR073303	Juvenile bud 1	0.174
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.276
	CRR073306	Third green 1	2.366
	CRR073307	Third green 2	1.848
	CRR073308	Third green 3	2.658
	CRR073309	Second white 1	3.054
	CRR073310	Second white 2	3.400
	CRR073311	Second white 3	3.632
	CRR073312	Silver flowering 1	2.991
	CRR073313	Silver flowering 2	2.900
	CRR073314	Silver flowering 3	1.950
	CRR073315	Gold flowering 1	0.883
	CRR073316	Gold flowering 2	0.430
	CRR073317	Gold flowering 3	0.412
	CRR073318	Tawny withering 1	3.047
	CRR073319	Tawny withering 2	0.721
	CRR073320	Tawny withering 3	2.154