Gene detail

Detail information of GWHGAAZE012575

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282768.1	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Vitis vinifera]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|D7T903\|D7T903_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26974.3}
TAIR10	AT2G01210.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87999881	88002150	-
GWHAAZE00000003	mRNA	87999881	88002150	-
GWHAAZE00000003	exon	87999881	88000551	-
GWHAAZE00000003	exon	88000674	88002150	-
GWHAAZE00000003	CDS	88000674	88002150	-
GWHAAZE00000003	CDS	87999881	88000551	-

Transcript Sequence
>GWHTAAZE012589 ATGTTAGCCTTATTTTTGCTCATATTTCTCTTGTTCAACTCTCAAGCCCTAGTTTCTTCTTTGAATGATGAAGGCTCTGCACTTCTTTCCTTCAAACAATCCATCACACTAGACCCAGAAGGGTCACTAAACAACTGGAACTTTTCTGATGAAAACCCTTGTTCTTGGAATGGCATTACTTGTAAAGACCAAAAAGTTGTCTCTGTTAGTATCCCAAAGAAGAAACTATATGGGTTTCTTCATCCTTCTCTTGGATCTCTCTCTCAGCTTAGGCATTTAAATTTAAGGAACAATAAGTTCTTTGGAACCTTACCTCTTGAGCTCTTTGAAGCACAAGGGATCCAAAGTTTGGTCCTTTATGGTAATTCTTTATCTGGTTCAGTACCTTCTGAGGTTGGAAACCTTAATTACCTTCAAGCCCTAGATTTGTCAGTAAATTTCTTCAATGGGTCTTTGCCCTCTTCGTTAATTCAGTGCAATAGGCTTAAAATCCTTGATCTCAGGCAAAACAATTTCACCGGTGCTCTGCCTCAAGGGTTTGGGGCTAATTTGGTTTCTATTGAAAAATTGGATCTTTCCTTCAACAAATTTGCTGGTCCAATTCCTAGTGATTTGGGAAATTTGTCTAATTTGCAAGGAACTGTTGATTTGTCTCATAATTTGTTCAATGGGTCAATCCCTGCAAGTCTTGGTAACCTTCCAGAGAAGGTTTATATTGACCTCACTTATAACAGTTTAAGTGGGCCAATTCCACAAAATGGTGCTCTAATTAACAGAGGGCCAACAGCTTTTATAGGAAACCCTGATCTCTGTGGCCCTCCATTGAAGAATCTTTGTTCTTCAGATACTGCAGGTGCAAATTCGCCTTCTTCGTACCCTTACTTGCCTAGTAACTTACCTCAGAACGCCAGTGATAGCGGAGGAAAAGGCGAGAAACGAGGCGGGCTAAGTAAGAGTGCTATTATCGCGATTGTTGTTAGTGATGTAATTGGGATTTGCTTCATTGGTTTGCTATTTTCGTATTGTTATTCGAGGATTTGTGCTTGTGGAAAGGAAAAAGGGGAAAATGGTTACGGTTTGGAGAAAAGAGGAAAGCGGAGGAAAGAGTGTTTGTGCTTTAGGAAAGACGAGTCCGAGACCTTATCGGAAAATGTGGAGCAATACGATCTCGTACCGTTGGATAAGCAAGTGGCGTTCGATCTAGACGAGCTTCTAAAAGCGTCGGCTTTTGTGCTAGGGAAGAGTGGGATTGGGATTGTTTACAAGGTTGTTCTTGAAGATGGGCTTACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCACAAAGGTTCAAGGAGTTTCAAACAGAAGTAGAAGCAATTGGGAAGCTAAGACATCCTAATATTGTAACTCTTAGAGCCTACTATTGGTCTGTTGATGAGAAGCTCCTCATATATGATTACATACCAAATGGTAACCTTGCCACTGCAATTCATGGGAAGCCCGAAATGGTCTCATTTACGCCTCTTTCATGGGCAATTCGGTTGAAAATAATGAAAGGAGTAGCTAAGGGCTTGATTTTTCTACATGAATATAGCCCCAAAAAGTATGTTCATGGAGACCTAAAGCCATCTAATGTACTTCTTGGACAGACCATGGAGCCTCTAATCTCTGACTTTGGGTTAGGGCGTCTTGCTAATATAGCCGGAGGATCTCCGCCTGTTCAATCCACCCGAATTCCCGGTGAGAAAACACCACAAAGGCAGCAAAGCAATGCCCCGTTGGACGTTTTAACAGTGAACTCAACTGCAAATCCATCTTCCTATTATCAAGCGCCCGAGGCTTTGAAAGTGGTGAAGCCCTCACAAAAATGGGATGTTTACTCCTACGGAGTGATATTATTAGAAATGATTACTGGAAGATCACCAGTTGTTCAGGTGGGTGCCTCAGAAATGGATCTTGTTCGTTGGATTCAGCTGTGTATCGAAGAAAAGAAGCCCCTTTGTGATGTTTTGGATCCATATTTGGGTCAAGATGCGGATAAAGAAGAGGAGATTATTGGGGTTTTAAAGGTTGCAATGGCTTGTATAACGAGCAGCGCTGAGAGGAGACCGGCTATGAGGCATGTTTATGATGCTTTGGAAAGATTAGAAGTCTCTGCCGACTAA

Network for GWHGAAZE012575

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	22	61	1.00E-13
PF00560.34	LRR_1	89	105	0.95
PF00069.26	Pkinase	412	644	1.70E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.310
	SRR3591706	second leaf	18.131
	SRR3591707	mature leaf	3.435
	SRR3591708	Shoot apex	37.003
	SRR3591709	Stem	19.495
	SRR3591710	White floral bud	5.951
	SRR3591711	White flower	5.865
	SRR3591712	Green floral bud	7.465
	SRR3591713	Yellow flower	0.974
SRP173429	SRR8316895	Juvenile bud stage	10.236
	SRR8316896	Juvenile bud stage	8.342
	SRR8316897	Juvenile bud stage	5.048
	SRR8316894	Third green stage	4.064
	SRR8316900	Third green stage	5.904
	SRR8316901	Third green stage	5.142
	SRR8316898	Complete white stage	0.562
	SRR8316899	Complete white stage	6.776
	SRR8316903	Complete white stage	1.498
	SRR8316902	Silver flowering stage	0.545
	SRR8316904	Silver flowering stage	0.599
	SRR8316905	Silver flowering stage	0.350
	SRR8316906	Gold flowering stage	0.569
	SRR8316907	Gold flowering stage	0.759
	SRR8316908	Gold flowering stage	0.981
SRP132670	SRR6706286	Control	8.299
	SRR6706287	Light intensity 50%	10.038
	SRR6706288	Light intensity 20%	9.604
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.631
	CNS0095593	Slightly white alabastrum(diploid) 2	6.382
	CNS0095594	Slightly white alabastrum(diploid) 3	3.840
	CNS0095595	Whole white alabastrum(diploid) 2	4.610
	CNS0095596	Whole white alabastrum(diploid) 3	2.659
	CNS0095597	Whole white alabastrum(diploid) 4	3.203
	CNS0095598	Silvery flower (diploied) 1	7.365
	CNS0095599	Silvery flower (diploied) 2	6.409
	CNS0095600	Silvery flower (diploied) 3	2.795
	CNS0095601	Golden flower (diploid) 1	3.982
	CNS0095602	Golden flower (diploid) 2	3.544
	CNS0095603	Golden flower (diploid) 3	3.764
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.287
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.858
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.481
	CNS0095610	Silvery flower (tetraploid) 1	0.483
	CNS0095611	Silvery flower (tetraploid) 2	1.953
	CNS0095612	Silvery flower (tetraploid) 3	1.517
	CNS0095613	Golden flower (tetraploid) 1	0.135
	CNS0095614	Golden flower (tetraploid) 2	0.128
	CNS0095615	Golden flower (tetraploid) 3	0.063
CRA001975	CRR073297	Stem 1	14.298
	CRR073298	Stem 2	13.731
	CRR073299	Stem 3	18.338
	CRR073300	Leaf 1	10.829
	CRR073301	Leaf 2	11.416
	CRR073302	Leaf 3	8.451
	CRR073303	Juvenile bud 1	6.783
	CRR073304	Juvenile bud 2	3.312
	CRR073305	Juvenile bud 3	10.993
	CRR073306	Third green 1	0.946
	CRR073307	Third green 2	1.334
	CRR073308	Third green 3	1.987
	CRR073309	Second white 1	0.237
	CRR073310	Second white 2	0.149
	CRR073311	Second white 3	0.338
	CRR073312	Silver flowering 1	0.022
	CRR073313	Silver flowering 2	0.199
	CRR073314	Silver flowering 3	0.040
	CRR073315	Gold flowering 1	9.891
	CRR073316	Gold flowering 2	14.477
	CRR073317	Gold flowering 3	9.138
	CRR073318	Tawny withering 1	33.424
	CRR073319	Tawny withering 2	24.805
	CRR073320	Tawny withering 3	31.388