Detail information of GWHGAAZE012551


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP34986.10hypothetical protein JCGZ_09274 [Jatropha curcas]
trEMBLtr|A0A067KFH2|A0A067KFH2_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP34986.1}
TAIR10AT1G15130.10Endosomal targeting BRO1-like domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8764863187655658-
GWHAAZE00000003mRNA8764863187655658-
GWHAAZE00000003exon8764863187649137-
GWHAAZE00000003exon8764967187649774-
GWHAAZE00000003exon8765005687650104-
GWHAAZE00000003exon8765145287651592-
GWHAAZE00000003exon8765168087651760-
GWHAAZE00000003exon8765213187652199-
GWHAAZE00000003exon8765272787652816-
GWHAAZE00000003exon8765352087654473-
GWHAAZE00000003exon8765498787655658-
GWHAAZE00000003CDS8765498787655658-
GWHAAZE00000003CDS8765352087654473-
GWHAAZE00000003CDS8765272787652816-
GWHAAZE00000003CDS8765213187652199-
GWHAAZE00000003CDS8765168087651760-
GWHAAZE00000003CDS8765145287651592-
GWHAAZE00000003CDS8765005687650104-
GWHAAZE00000003CDS8764967187649774-
GWHAAZE00000003CDS8764863187649137-
Transcript Sequence

Network for GWHGAAZE012551

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03097.19BRO1133924.70E-105
PF13949.7ALIX_LYPXL_bnd4287397.40E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12200PDCD6IP, ALIX, RIM20 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.160
SRR3591706second leaf20.303
SRR3591707mature leaf20.528
SRR3591708Shoot apex26.944
SRR3591709Stem40.416
SRR3591710White floral bud44.864
SRR3591711White flower46.555
SRR3591712Green floral bud40.506
SRR3591713Yellow flower39.071
SRP173429 SRR8316895Juvenile bud stage 17.983
SRR8316896Juvenile bud stage 27.057
SRR8316897Juvenile bud stage 11.737
SRR8316894Third green stage 10.521
SRR8316900Third green stage 30.845
SRR8316901Third green stage 26.686
SRR8316898Complete white stage 12.684
SRR8316899Complete white stage 34.675
SRR8316903Complete white stage 25.326
SRR8316902Silver flowering stage13.751
SRR8316904Silver flowering stage20.321
SRR8316905Silver flowering stage10.212
SRR8316906Gold flowering stage 34.627
SRR8316907Gold flowering stage 35.658
SRR8316908Gold flowering stage 37.653
SRP132670SRR6706286Control51.095
SRR6706287Light intensity 50%48.678
SRR6706288Light intensity 20%46.046
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.892
CNS0095593Slightly white alabastrum(diploid) 217.059
CNS0095594Slightly white alabastrum(diploid) 315.659
CNS0095595Whole white alabastrum(diploid) 213.532
CNS0095596Whole white alabastrum(diploid) 312.670
CNS0095597Whole white alabastrum(diploid) 414.072
CNS0095598Silvery flower (diploied) 122.177
CNS0095599Silvery flower (diploied) 220.460
CNS0095600Silvery flower (diploied) 337.929
CNS0095601Golden flower (diploid) 118.627
CNS0095602Golden flower (diploid) 239.864
CNS0095603Golden flower (diploid) 339.426
CNS0095604Slightly white alabastrum(tetraploid) 117.073
CNS0095605Slightly white alabastrum(tetraploid) 213.936
CNS0095606Slightly white alabastrum(tetraploid) 332.055
CNS0095607Whole white alabastrum(tetraploid) 112.232
CNS0095608Whole white alabastrum(tetraploid) 210.820
CNS0095609Whole white alabastrum(tetraploid) 325.308
CNS0095610Silvery flower (tetraploid) 130.657
CNS0095611Silvery flower (tetraploid) 232.407
CNS0095612Silvery flower (tetraploid) 333.401
CNS0095613Golden flower (tetraploid) 116.299
CNS0095614Golden flower (tetraploid) 228.703
CNS0095615Golden flower (tetraploid) 334.438
CRA001975CRR073297Stem 142.151
CRR073298Stem 240.322
CRR073299Stem 339.638
CRR073300Leaf 145.039
CRR073301Leaf 241.645
CRR073302Leaf 332.042
CRR073303Juvenile bud 136.434
CRR073304Juvenile bud 229.990
CRR073305Juvenile bud 357.755
CRR073306Third green 128.172
CRR073307Third green 222.645
CRR073308Third green 326.512
CRR073309Second white 131.535
CRR073310Second white 229.538
CRR073311Second white 330.421
CRR073312Silver flowering 141.868
CRR073313Silver flowering 250.027
CRR073314Silver flowering 342.764
CRR073315Gold flowering 122.557
CRR073316Gold flowering 233.124
CRR073317Gold flowering 330.819
CRR073318Tawny withering 142.044
CRR073319Tawny withering 230.655
CRR073320Tawny withering 333.512