Gene detail

Detail information of GWHGAAZE012534

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007225480.1	hypothetical protein PRUPE_ppa000119mg [Prunus persica]
Swissprot	tr\|Q9SSJ8\|FAB1C_ARATH	Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C
trEMBL	tr\|M5XL73\|M5XL73_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26679.1}
TAIR10	AT1G71010.1	FORMS APLOID AND BINUCLEATE CELLS 1C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87400233	87406967	+
GWHAAZE00000003	mRNA	87400233	87406967	+
GWHAAZE00000003	exon	87400233	87400669	+
GWHAAZE00000003	exon	87401077	87401802	+
GWHAAZE00000003	exon	87402149	87402302	+
GWHAAZE00000003	exon	87402379	87402723	+
GWHAAZE00000003	exon	87403334	87403927	+
GWHAAZE00000003	exon	87404015	87404346	+
GWHAAZE00000003	exon	87404427	87404553	+
GWHAAZE00000003	exon	87404654	87404818	+
GWHAAZE00000003	exon	87404926	87406272	+
GWHAAZE00000003	exon	87406349	87406615	+
GWHAAZE00000003	exon	87406713	87406967	+
GWHAAZE00000003	CDS	87400233	87400669	+
GWHAAZE00000003	CDS	87401077	87401802	+
GWHAAZE00000003	CDS	87402149	87402302	+
GWHAAZE00000003	CDS	87402379	87402723	+
GWHAAZE00000003	CDS	87403334	87403927	+
GWHAAZE00000003	CDS	87404015	87404346	+
GWHAAZE00000003	CDS	87404427	87404553	+
GWHAAZE00000003	CDS	87404654	87404818	+
GWHAAZE00000003	CDS	87404926	87406272	+
GWHAAZE00000003	CDS	87406349	87406615	+
GWHAAZE00000003	CDS	87406713	87406967	+

Transcript Sequence
>GWHTAAZE012548 ATGGGAATACCTGATAGGTCGCTTATAGATTTGATAGACAAGGTAAAGTCTTGGCTCTCTTGGGGAACTAGCGATCAAACTTGTTTGCCTCCTGAATTCACTATGTCCTATACCGGTTCCGAATTTTGTTATGACTGCGAGGTGGATCTTGCTGAGTCTAGCCTCAGTTACCACTGCCAAAGATGTGGTAGGGTGATTTGTCAAAAATGCCTGCAGGGTTGTGATATGAAGTCTTGCAAGTTTTGCTCTGATTTGAATATTGCACATGAAGGTGGCAAAAAGTATAGTGATAAAATCCATCCTTTTGAGTCTCCCCGACAAAGCCCGGAACCACCATCATCGAGTTCCAGTGGTGCCATAGTAGATGGATCTTCTCTCCATGATGTGACCAGAAGTGGTGGCCCAACTCCAGTATCTATTCGTCGTTCTCCAAATAGGAGTGATGAGGATGAGGGAGAGGATTCAGAAAATCACTTCTTGAGCCCATATAGTAATGATACTTCAGATGTAGATTCAAGTAGTGTTAGTGCTAGGAACTACAGTTTCAAGTCAGTTGGATCAAGTCCTTCGGACAGCCCCTCTAGGATTCATATTACTTCCAATAGAGTTGGGCACTCTGTACAGCAACAGAAAGTGGAAATTCTGAATGGTGGTCACTTCGATCAAGAAACCATGGCTGTTTTAAAAAGGTCAGGCACAGGGACTGAGGATCAAGATAATACTTATGACAAGCCGTTGGATTTTGAAAACGATGGTCTGATTTGGTTTCCTCCACCTCCTGATGATGAAGATGACGAGGCGGATAACAATTTCTTTGCATACAATGATGAAGATGATGAAGTTGGAGAGTCGAGTGCGGTATTTTCTTCCAGTAATAACCTCAATAGCATTTATCCCCAGGAGAAGAAGCAGGATGATGATTTCAAAGAACCTTTGATATCTGTGGTACATGGGCATTTTAGGGCCCTTGTTTCTCAGCTTTTAAATGGCGAAGGCTTCGAGGCGGGCAGCGAAAAAGGCATGGAGACCTGGCTTGACATTGTTACTGCAATAGCATGGCAAGCTGCTAACTTTGTAAAACCAGATACTAGAAAAGGAGGTAGTATGGATCCCGGTGATTATGTAAAGATTAAGTGTGTAGCATCAGGTCATCCTAGTGAGAGTAAACTTGTGAAAGGAGTAGTTTGTACAAAGAATATAAAACACAAGCGGATGACTTCACAATACAAAACCCCTAGATTACTTGTTTTAGGAGGAGCACTTGAGTACCAGAGAGTTCCCAATCAGCTGGCATCATTTGATAAATTACTGCAACAGGAGATCGATCATCTAAAGATGATTGTTTCAAAGATAGAGGCCCACCGTCCAAATGTTTTACTTGTAGAAAAAAGTGTATCTTCATATGCTCAAGAGTATTTGTTAGCGAAGGAGATCTCCTTAGTGTTGAATGTTAAAAGGTCAATACTAGAGCGGATTTCCAGGTGCACCGGTGCCCCTATAACTCCATCAATTGATAAAATATCTACAACATGGGTGGGACACTGTGAACTTTTTCGGTTAGAAAAAGTTTCTGAAGAGCATGAGGCTGCTAATCAATTTAACAAGAAGCCATCCAAAACCTTGATGTATTTTGAAGGTTGTCCCAGGCGTTTAGGTTGCACGGTCGTGCTCAAGGGCTCTTGTCGTGAAGAACTAAAGAAAATTAAACATGTAGTGCAATATGCTGTTTTTGCAGCCTATCATTTATCTCTAGAAACTTCCTTCCTTGCTGATGAAGGTGCTAGTCTACCAAAAATGACGGTGAAACCCTCTATTACAGTCCCAGAGAGGACAACTGCTAATAATCCCATTTCAATTGCCCCCACTTCCATTACTCCCACCACATACCCACAAGTTGAGGATCCTCTGAAATTTGATGAATTATTGGTTCAGAACCATAATCCTCATCATAATTTGCCTCCTACCCTTAATAGAGCTAGAACTATATTCACTGATGCTTTAGATGATGATTTACCAACTTTAATGGCTATGGAGGAATCACCCGAAACCCTAAGTCAAAAGAAGAGGCAAACGGGTAGAGCCCCAAGTGAATACTATTCATCGACCGATAGTCAGCAGAGCATATTAGTATCTTTTTCTAGCCGTTGTGTACTTACTGGAACCATATGTGAACGCTCTCGACTTTTGCGCATCAAGTTCTATGGATGCTTCGATAAGCCACTCGGAAGGTACCTTCGAGATGATCTGTTTGATCGGACCTCTTGCTGTCGATCATGTAAAGAACCAAGTGAAGCGCATGTCATATGCTATACCCATCAACAGGGTAATCTTACGATAAATGTTAGACGCCTTAATTCAATAAAGCTACCTGGGGAGCAAGATGGAAAGATATGGATGTGGCACCGGTGTCTCAGGTGCACACATATTGATGGAATTCCTCCAGCTACCCGGAGAGTGGTCATGTCTGATGCGGCCTGGGGACTTTCCTTTGGGAAGTTTTTGGAACTTAGTTTTTCAAACCATGCAACCGCCAACCGTGTTGCAAGCTGCGGTCATTCTCTGCAGAAGGACTGCCTTCGTTATTATGGCTTTGGGAGTATGGTTGCGTTCTTCCGCTATTCTCCTATTGAAATTCTTTCTGTCCGTTTGCCCCCATCAATGCTTGAGTTACATGACCATGTTCAAAACGATTGGTCAAGAAAAGAGGCAGCAGAGCTTTTGAGGAAAACAGAAGCCTTGTATGGGGAGATATCGAGTGTACTTGACAGCATTGAAAAAAAATTAACATCTTTTGGACATGAAATGTCCAATGCAAGTGAGTTACGAAACCACATCATTGAGTTCAAACAACTGATTATAGAAGAAATAAACAATTACACTGATGTGCTTCAACCAGCTGGTGAAGAGAATCCAGAATTAGGCCAGTCAGCGGTAGACATTCTTGAACTAAATCATATGAGACACTCCCTCCTAATTTCTTCACATATTTGGGATCGGCGGCTTTATTCACTTGATTCTCTTCTTAAAAGGTTCTCTAGTTGCAAGGTTGCCTCGGATACAGAGCCGAAAGAGCGAATAAGTGATGAGGAAGCATACGCAGATGGGGTACCAAAAATATCATCATTTGATCCTCGTGTTAATGAAGAGTCAACCTCATGCAAACATAGGAAAGCGGAGAATACAAACGACGATGGGGTTGTTGCAGTTACAGCCAATTTGTCCGAGAAAATAGATTCTGCGTGGACTGGTACTGATCGACACCCATCAAAAGTTCAGTTACTTGATAGACCTGAAGCTGCATCACTTGTACAAACAAATCAAATTATTAATCCACCTCTTAGAAAGCTAATGTTGCCGACCCGAGTTTATTCTTTCGATTCTGCGCTGAGGATTCAAGAAAGAATTAGGAAAGGACTGCCTCCCTCATTGTATTTATCGACCCTTAAATCCTTCCATGCTTCTGGAGACTACAGGAATATGGTTAGAGATCCCGTTTCTAAGAGGATGAATTCTCTAATATCACCCACTGAGGGACAGAATTTAAATCTTTTACTGCGGACCCCACCTTCATTTGTCTCTTCTGCATCTCTTTTACCCGAAGGGGCACATTTGCTTCTTCAAGAAAATGGGCGTAATAATGTAGTTGTTGCGGTTTATGATAATGAACCAACCAGCATAATATCTTTTGCCCTAACTTCCAAGGAACACGAAGACTGCATTTCAGACAAGCTGAGTGGAAGTGAAGGAGAAAATTCTGCCGCTTCAAACTTTTCCACCTGGCAGTCTTTTGGTTCTTTGGATTTGGACTACGTTCACTATGGATATGAAGATGCTTCAACGACAACTAGTGCCCCGTTTATGGATTCTAAGAGTTCCCCTCATCTTAAAATTTCTTTTGAAGACGAGTCTTCAAGTGCTGGGGGAAAGGTGAAGTTTTCTGTGACGTGTTATTTTGCAAGGGAATTTGATGCACTTAGGAAGAAGTGCTGTCCTAGAAAAATGGATTTTGTGCGTTCTTTAAGCCGCTGCAGTCGATGGAGTGCACAAGGAGGAAAAAGTAACGTCTATTTTGCCAAGTCATTTGATGAAAGGTTCATTATAAAACAAGTCACTAAGACAGAGTTGGAATCTTTTGAGGAATTCGCACCCGAATACTTTAAGTATTTGACAGATTCTCTTAACTCAGGAAGTCCAACTTGCCTTGCTAAGGTTCTTGGTATTTATCAGGTGACAGTCAAAAACTTGAAGGGTGGCAAGGAGACAAAAATGGATTTAATGGTGATGGAGAATCTGTTTTTTGGAAGAAATATTTCAAGGGTCTATGATCTTAAGGGCTCGGCACGGTCTCGTTATAATTCAGATACAACAGGAACCAACAAAGTGTTGCTAGATATGAATCTGTTAGAAGCACTGCGTACAAAGCCCATATTTCTTGGAAGCAAAGCTAAGAGAAGCCTTGAAAGAGCGGTGTGGAACGATACGTCCTTTTTAGCGTCTGCTGATGTAATGGACTATTCATTGCTGGTTGGAGTGGACGAGGAGAAGAAGGAACTGGTATTAGGGATAATCGACTTTATGAGACAGTATACTTGGGACAAGCATTTAGAGACGTGGGTAAAGGCGTCTGGTATACTTGGCGGTCCGAAAAATGCTTCCCCAACCATTATCTCTCCCAAACAATACAAGAGAAGATTCAGAAAAGCAATGACTACCTATTTTCTTACAGTGCCTGATCAGTGGTCATCATGA

Network for GWHGAAZE012534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	339	582	1.30E-31
PF01504.19	PIP5K	1349	1515	9.80E-34

Protein Sequence

>GWHPAAZE012541
MGIPDRSLIDLIDKVKSWLSWGTSDQTCLPPEFTMSYTGSEFCYDCEVDLAESSLSYHCQRCGRVICQKCLQGCDMKSCKFCSDLNIAHEGGKKYSDKIHPFESPRQSPEPPSSSSSGAIVDGSSLHDVTRSGGPTPVSIRRSPNRSDEDEGEDSENHFLSPYSNDTSDVDSSSVSARNYSFKSVGSSPSDSPSRIHITSNRVGHSVQQQKVEILNGGHFDQETMAVLKRSGTGTEDQDNTYDKPLDFENDGLIWFPPPPDDEDDEADNNFFAYNDEDDEVGESSAVFSSSNNLNSIYPQEKKQDDDFKEPLISVVHGHFRALVSQLLNGEGFEAGSEKGMETWLDIVTAIAWQAANFVKPDTRKGGSMDPGDYVKIKCVASGHPSESKLVKGVVCTKNIKHKRMTSQYKTPRLLVLGGALEYQRVPNQLASFDKLLQQEIDHLKMIVSKIEAHRPNVLLVEKSVSSYAQEYLLAKEISLVLNVKRSILERISRCTGAPITPSIDKISTTWVGHCELFRLEKVSEEHEAANQFNKKPSKTLMYFEGCPRRLGCTVVLKGSCREELKKIKHVVQYAVFAAYHLSLETSFLADEGASLPKMTVKPSITVPERTTANNPISIAPTSITPTTYPQVEDPLKFDELLVQNHNPHHNLPPTLNRARTIFTDALDDDLPTLMAMEESPETLSQKKRQTGRAPSEYYSSTDSQQSILVSFSSRCVLTGTICERSRLLRIKFYGCFDKPLGRYLRDDLFDRTSCCRSCKEPSEAHVICYTHQQGNLTINVRRLNSIKLPGEQDGKIWMWHRCLRCTHIDGIPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLQKDCLRYYGFGSMVAFFRYSPIEILSVRLPPSMLELHDHVQNDWSRKEAAELLRKTEALYGEISSVLDSIEKKLTSFGHEMSNASELRNHIIEFKQLIIEEINNYTDVLQPAGEENPELGQSAVDILELNHMRHSLLISSHIWDRRLYSLDSLLKRFSSCKVASDTEPKERISDEEAYADGVPKISSFDPRVNEESTSCKHRKAENTNDDGVVAVTANLSEKIDSAWTGTDRHPSKVQLLDRPEAASLVQTNQIINPPLRKLMLPTRVYSFDSALRIQERIRKGLPPSLYLSTLKSFHASGDYRNMVRDPVSKRMNSLISPTEGQNLNLLLRTPPSFVSSASLLPEGAHLLLQENGRNNVVVAVYDNEPTSIISFALTSKEHEDCISDKLSGSEGENSAASNFSTWQSFGSLDLDYVHYGYEDASTTTSAPFMDSKSSPHLKISFEDESSSAGGKVKFSVTCYFAREFDALRKKCCPRKMDFVRSLSRCSRWSAQGGKSNVYFAKSFDERFIIKQVTKTELESFEEFAPEYFKYLTDSLNSGSPTCLAKVLGIYQVTVKNLKGGKETKMDLMVMENLFFGRNISRVYDLKGSARSRYNSDTTGTNKVLLDMNLLEALRTKPIFLGSKAKRSLERAVWNDTSFLASADVMDYSLLVGVDEEKKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPKQYKRRFRKAMTTYFLTVPDQWSS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.926
	SRR3591706	second leaf	9.092
	SRR3591707	mature leaf	4.919
	SRR3591708	Shoot apex	19.615
	SRR3591709	Stem	23.010
	SRR3591710	White floral bud	60.903
	SRR3591711	White flower	51.410
	SRR3591712	Green floral bud	20.257
	SRR3591713	Yellow flower	46.952
SRP173429	SRR8316895	Juvenile bud stage	11.330
	SRR8316896	Juvenile bud stage	14.500
	SRR8316897	Juvenile bud stage	5.916
	SRR8316894	Third green stage	7.397
	SRR8316900	Third green stage	21.471
	SRR8316901	Third green stage	19.633
	SRR8316898	Complete white stage	21.015
	SRR8316899	Complete white stage	24.340
	SRR8316903	Complete white stage	52.887
	SRR8316902	Silver flowering stage	22.756
	SRR8316904	Silver flowering stage	33.189
	SRR8316905	Silver flowering stage	12.574
	SRR8316906	Gold flowering stage	36.043
	SRR8316907	Gold flowering stage	32.984
	SRR8316908	Gold flowering stage	24.839
SRP132670	SRR6706286	Control	12.079
	SRR6706287	Light intensity 50%	13.266
	SRR6706288	Light intensity 20%	12.769
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.161
	CNS0095593	Slightly white alabastrum(diploid) 2	11.526
	CNS0095594	Slightly white alabastrum(diploid) 3	9.282
	CNS0095595	Whole white alabastrum(diploid) 2	9.179
	CNS0095596	Whole white alabastrum(diploid) 3	7.910
	CNS0095597	Whole white alabastrum(diploid) 4	9.740
	CNS0095598	Silvery flower (diploied) 1	16.939
	CNS0095599	Silvery flower (diploied) 2	13.621
	CNS0095600	Silvery flower (diploied) 3	48.348
	CNS0095601	Golden flower (diploid) 1	17.073
	CNS0095602	Golden flower (diploid) 2	35.264
	CNS0095603	Golden flower (diploid) 3	34.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.537
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.846
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.994
	CNS0095610	Silvery flower (tetraploid) 1	90.064
	CNS0095611	Silvery flower (tetraploid) 2	89.565
	CNS0095612	Silvery flower (tetraploid) 3	137.824
	CNS0095613	Golden flower (tetraploid) 1	82.054
	CNS0095614	Golden flower (tetraploid) 2	97.611
	CNS0095615	Golden flower (tetraploid) 3	261.863
CRA001975	CRR073297	Stem 1	12.846
	CRR073298	Stem 2	13.015
	CRR073299	Stem 3	5.794
	CRR073300	Leaf 1	22.059
	CRR073301	Leaf 2	15.174
	CRR073302	Leaf 3	8.198
	CRR073303	Juvenile bud 1	9.173
	CRR073304	Juvenile bud 2	11.165
	CRR073305	Juvenile bud 3	15.841
	CRR073306	Third green 1	10.260
	CRR073307	Third green 2	8.334
	CRR073308	Third green 3	12.502
	CRR073309	Second white 1	4.758
	CRR073310	Second white 2	7.482
	CRR073311	Second white 3	5.382
	CRR073312	Silver flowering 1	3.551
	CRR073313	Silver flowering 2	3.446
	CRR073314	Silver flowering 3	3.499
	CRR073315	Gold flowering 1	1.406
	CRR073316	Gold flowering 2	2.279
	CRR073317	Gold flowering 3	0.523
	CRR073318	Tawny withering 1	11.192
	CRR073319	Tawny withering 2	8.815
	CRR073320	Tawny withering 3	7.869