Gene detail

Detail information of GWHGAAZE012475

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006346490.1	PREDICTED: probable receptor protein kinase TMK1-like [Solanum tuberosum]
Swissprot	tr\|P43298\|TMK1_ARATH	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|M1CG13\|M1CG13_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400066706}
TAIR10	AT1G66150.1	transmembrane kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86176704	86180131	+
GWHAAZE00000003	mRNA	86176704	86180131	+
GWHAAZE00000003	exon	86176704	86177145	+
GWHAAZE00000003	exon	86177238	86179055	+
GWHAAZE00000003	exon	86179605	86180131	+
GWHAAZE00000003	CDS	86176704	86177145	+
GWHAAZE00000003	CDS	86177238	86179055	+
GWHAAZE00000003	CDS	86179605	86180131	+

Transcript Sequence
>GWHTAAZE012489 ATGGAGGAGAAACAGTTCTCTTCTTCTAGGGTTCGCCTTCGAAAAACCCTCTTCTTCACTCTCTCTATATTCTCTCTTCTTATACTATTACTCTGTTCGTCTGTTCACTCTCAGTCCACCGATGGTGATGATACTTCTGTAATGCAGGATTTCAAAAATTCCCTCAAAACCCTACCATCTGGTTGGGAAGCCCCAGACCCATCTAAATGGACCGGCGTTCAGTGGTCCAAGGACAACCGGGTCACCCGGATCCGAATCCGTGAACAGAACCTCACCGGTTCTCTCCCCCCCAACCTCGGCAACCTCACCGCCTTGCAGAGCTTAGACCTTGCTCGCAACCAACTCACCGGCCCACTCCCGAGTCTAGCCGGGTTGAGTTCGGTTCAAGTCCTGTTATTATCCAATAACAATTTCACCTCAATCCCCCCTGATTTTTTTACTGTTTTCTCGGCCACTAACGCTAGCATTTCCGGGAAAATCCCGGATTTCTTCGGGGGAGATACCTTTGCTGGGTTAACACAATTGCATCTTGCGTATAATTTACTAGAGGGTGAATTGCCCAAGAGTTTTGCGGGCTCTTCTATTCAGTCTCTGTGGTTGAATGGGCAGAAAAGTACTTCTAAACTTACGGGTAGAATTGATGTTTTACATAACATGACCCAATTGTCTGAGGTCTGGTTACACACTAATTCCTTTTCCGGTCCCTTACCGGATTTCTCGGGTTTGATCCAGTTGCAAAACTTCAGTGTGAGAGATAATAGCTTTACTGGTCCGGTACCTGAATCTTTGATGGGGTTAAAGTCACTTCAGGTGGTGAATTTGACTAACAATATGCTACAGGGTCCAACTCCAAAGTTTGGACCTTCTGTTGCAGTGGATATGAGTGATGACACAAATAGTTTTTGTTTACCTGATCCCGGTGTTAATTGTGATATCCGTGTGTCCCAGTTGCTTGATGTTGCCCAATCAATGGAGTACCCGACGGTGTTTGCGGAGAATTGGAAAGGTAATGACCCGTGTTCCCAGCCCCAATGGCTCGGGATTACATGTTCAAATGGGAATATTACTGTTGTTAATTTGCAAAAGTTTGGGCTTACGGGTACGATTTCTCCCAGATTTGCTGACATGACATCTTTGGAAAGATTGATTCTTGCCAACAATAATCTTACTGGTACAATCCCAAGTGAGCTTACTAGTTTGGCTAACCTTAAAGAATTAGATGTTTCAAACAATCAGCTTTACGGTAAAATCCCAGCGTTTAGGGGTAATGTGCATACAAAAACTGACGGCAATGTCAATATTGGAAAGGATAGTGTTCCTATTACACCAGCAACACCTGGCTCCCCCTCAGGTACAAATACTCCTGCAAGCCGTAACAGTACAGAGTCAAGTGGTGGCAAGAAATCTTCAGCCAAAGTGGTTGCAGGTTCGGTAGCTGGTGGTGTATGTGCATTTTTTGTTGCTGGAATACTAGTGTTCTTACTTTACAGAACTAAGCATAAGCGTTCTTCTAGAGTGCAGTCCCCGAATACGATGGTGATTCATCCTCGCCATTCAGGGTCAGACAATGATACAATTAAGATCACGGTTGCTGGTTCGAGTGGCAATCGTGGGCCAACTACTGAAACTTACAGCCATGGGAGTAGTGGAACTAATGATCTTCATATTGTTGAGAGTGGAAACATGGTGATTTCAATCCAAGTGTTAAAGAATGTGACTAATAACTTTAGCGAAAAGAACATATTGGGAAAAGGTGGGTTCGGAACTGTTTACAAAGGTGAGTTGCATGATGGGACTAAGATTGCTGTTAAGAGGATGGAATCTGCTGTGGTTACCGAGAAGGGTTTGAATGAATTTAAGTCCGAGATTGCTGTTCTTACTAAGGTTCGACATAGGCATTTAGTTGCTCTTTTGGGGTATTGCTTGGATGGAAATGAGAGGCTTCTTGTCTTTGAGTACATGCCACAGGGGACACTTAGTAGGCATCTTTTTAACTGGTCTGAGGAAGGTTTGAAGCCTCTTGAATGGACGAAAAGGTTAATTATTGCGTTGGATGTTGCTAGGGGTGTTGAGTATCTACACGGGTTAGCCCAACAAACATTTATTCATAGGGATCTTAAACCATCCAACATTCTTCTGGGTGATGATATGCGTGCTAAAGTTGCCGACTTTGGACTTGTTCGTCTTGCTCCGGAAGGGAAAACTTCTATTGTGACAAAATTAGCTGGGACTTTTGGGTATCTTGCACCTGAATATGCTGTGACTGGTCGAGTAACCACTAAAATCGACGTGTTCAGCTTTGGTGTGATTCTAATGGAGCTGATAACGGGAAGAAAGGCACTAGAGGACACGGACGATGATAGCATGCACCTCGTCCCGTGGTTCCGCAGAATGCACAATACTAAGGATACCTTCCGGAAGGCCATCGACCCAACAATGAATCTTGACGAGGAAGCCCTCGCCAGTGTGAGCACCATGGCTGAGCTGGCGTTCCACTGCTGTGCAAGGGAACCCCACCAAAGGCCCGACATGGGTCATGCCGTTAACGTGCTTTCCTCACTCGCCGAGCTTTGGAAACCGAGCGAGACAGATCCCGATGACATTTACGGGATCGATTACGATATGAGCTTACCTGATGCAATCAAGAAGTGGCAGGCTATGGAGGGAATGAGTGGCTACGATGGTACTTCCTCGTCTATGATGGGGAGCAACGATAATACGCAAACCAGCATACCTACTCGGCCTTCTGGATTTGCGGATTCGTTTACATCAGCAGATGGACGATGA

Network for GWHGAAZE012475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	42	73	4.4
PF08263.13	LRRNT_2	317	351	0.001
PF12799.8	LRR_4	377	418	4.70E-07
PF00069.26	Pkinase	577	849	5.90E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-IX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.444
	SRR3591706	second leaf	24.452
	SRR3591707	mature leaf	17.836
	SRR3591708	Shoot apex	35.968
	SRR3591709	Stem	21.666
	SRR3591710	White floral bud	30.704
	SRR3591711	White flower	28.501
	SRR3591712	Green floral bud	31.838
	SRR3591713	Yellow flower	13.852
SRP173429	SRR8316895	Juvenile bud stage	32.910
	SRR8316896	Juvenile bud stage	36.322
	SRR8316897	Juvenile bud stage	18.820
	SRR8316894	Third green stage	14.585
	SRR8316900	Third green stage	37.552
	SRR8316901	Third green stage	32.681
	SRR8316898	Complete white stage	11.917
	SRR8316899	Complete white stage	50.089
	SRR8316903	Complete white stage	32.247
	SRR8316902	Silver flowering stage	14.428
	SRR8316904	Silver flowering stage	24.097
	SRR8316905	Silver flowering stage	12.891
	SRR8316906	Gold flowering stage	35.643
	SRR8316907	Gold flowering stage	32.684
	SRR8316908	Gold flowering stage	32.703
SRP132670	SRR6706286	Control	52.323
	SRR6706287	Light intensity 50%	50.191
	SRR6706288	Light intensity 20%	53.199
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.053
	CNS0095593	Slightly white alabastrum(diploid) 2	33.285
	CNS0095594	Slightly white alabastrum(diploid) 3	25.275
	CNS0095595	Whole white alabastrum(diploid) 2	26.497
	CNS0095596	Whole white alabastrum(diploid) 3	20.544
	CNS0095597	Whole white alabastrum(diploid) 4	27.586
	CNS0095598	Silvery flower (diploied) 1	32.511
	CNS0095599	Silvery flower (diploied) 2	25.639
	CNS0095600	Silvery flower (diploied) 3	57.992
	CNS0095601	Golden flower (diploid) 1	29.383
	CNS0095602	Golden flower (diploid) 2	51.749
	CNS0095603	Golden flower (diploid) 3	48.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.166
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.586
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.730
	CNS0095610	Silvery flower (tetraploid) 1	23.888
	CNS0095611	Silvery flower (tetraploid) 2	34.295
	CNS0095612	Silvery flower (tetraploid) 3	48.563
	CNS0095613	Golden flower (tetraploid) 1	8.359
	CNS0095614	Golden flower (tetraploid) 2	18.418
	CNS0095615	Golden flower (tetraploid) 3	36.399
CRA001975	CRR073297	Stem 1	57.037
	CRR073298	Stem 2	52.077
	CRR073299	Stem 3	51.760
	CRR073300	Leaf 1	58.189
	CRR073301	Leaf 2	53.431
	CRR073302	Leaf 3	39.802
	CRR073303	Juvenile bud 1	57.765
	CRR073304	Juvenile bud 2	31.432
	CRR073305	Juvenile bud 3	103.881
	CRR073306	Third green 1	51.448
	CRR073307	Third green 2	46.411
	CRR073308	Third green 3	54.799
	CRR073309	Second white 1	61.640
	CRR073310	Second white 2	42.524
	CRR073311	Second white 3	63.615
	CRR073312	Silver flowering 1	54.788
	CRR073313	Silver flowering 2	61.511
	CRR073314	Silver flowering 3	40.228
	CRR073315	Gold flowering 1	36.362
	CRR073316	Gold flowering 2	61.084
	CRR073317	Gold flowering 3	44.899
	CRR073318	Tawny withering 1	52.816
	CRR073319	Tawny withering 2	35.025
	CRR073320	Tawny withering 3	51.986