Gene detail

Detail information of GWHGAAZE012474

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010648962.1	PREDICTED: histidine kinase 4 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9C5U0\|AHK4_ARATH	Histidine kinase 4
trEMBL	tr\|F6HFB2\|F6HFB2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50761.1}
TAIR10	AT2G01830.3	CHASE domain containing histidine kinase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86159232	86165040	+
GWHAAZE00000003	mRNA	86159232	86165040	+
GWHAAZE00000003	exon	86159232	86159561	+
GWHAAZE00000003	exon	86159764	86159997	+
GWHAAZE00000003	exon	86160092	86160261	+
GWHAAZE00000003	exon	86161205	86161423	+
GWHAAZE00000003	exon	86161555	86161741	+
GWHAAZE00000003	exon	86161834	86161885	+
GWHAAZE00000003	exon	86161983	86162212	+
GWHAAZE00000003	exon	86162409	86162507	+
GWHAAZE00000003	exon	86162608	86163320	+
GWHAAZE00000003	exon	86163789	86164292	+
GWHAAZE00000003	exon	86164782	86165040	+
GWHAAZE00000003	CDS	86159232	86159561	+
GWHAAZE00000003	CDS	86159764	86159997	+
GWHAAZE00000003	CDS	86160092	86160261	+
GWHAAZE00000003	CDS	86161205	86161423	+
GWHAAZE00000003	CDS	86161555	86161741	+
GWHAAZE00000003	CDS	86161834	86161885	+
GWHAAZE00000003	CDS	86161983	86162212	+
GWHAAZE00000003	CDS	86162409	86162507	+
GWHAAZE00000003	CDS	86162608	86163320	+
GWHAAZE00000003	CDS	86163789	86164292	+
GWHAAZE00000003	CDS	86164782	86165040	+

Transcript Sequence
>GWHTAAZE012488 ATGGGTCTGAAGATGAAGAGAAACCACTATGTTGCAGTGAGGTTGAATGAGCAATTGGGCATCAAAAGGAAGTACACATTCATCAACAGAGCTTGGCTCCCTAAAATTCTATTTCTATGGATCATATTCATGGCCTTTGTTGGCAGAGTAATTTACAATAGAATGGATGCTGAAAACAAGGAGAGAAGAAATGAAGTACTTGTGAGCATGTGTGATCAAAGGGCCAGGATGTTACAAGATCAATTCAGTGTTAGTGTTAACCATGTCCATGCCCTTGCTGTTCTTGTATCCACTTTCCATTATTACAAGAACCCATCAGCTATTGATCAGGAAACTTTTGCCGAGTACACTGCGAGAACGGCTTTTGAGAGGCCGTTGTTGAGTGGGGTGGCATACGCAGAAAGGGTTGTGAATTCAAAGAGGGAAGAATTCGAGAGGCAACACGGTTGGACCATAAGGACAATGGAGAAGGAGCCTTCGCCTTTGCGCGATGAATATGCACCTGTTATATTCTCTCAAGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCAGGGGAGGAGGATAGAGAAAACATTTTGAGGGCTAGGGCTACTGGGAAAGCAGTTCTTACCAATCCTTTCAAGCTTTTGGGTTCTCATCATCTTGGGGTGGTGTTGACATTCCCTGTTTACAAATCCAAGCTTCCCCCAAATCCATCCGAAGAAGAACGCATTACGGCAACTGCAGGATACCTTGGTGGAGCCTTCGATGTTGAGTCCCTTGTTGAAAAGCTACTTGGGCAACTTGCTGGGAACCAAGCGATTGTGGTGAACGTATATGACATTACTAACTCCTCTGATCCCCTAATCATGTACGGCCGTCAATATCAAGATGGCGACTTTTCACTGAGCCATGAAAGTGCCCTCGACTTTGGGGATCCATTTCGAAAGCACCAAATGATATGTAGGTATCTTCAGAAGGCACCTACATCATGGACAGCAATCACCACCGCGTCCTTATTCTTTGTAATTGGTTTATTAGTGGGCTATATGATATATGGTGCAGCTATTCACATTGTTAAAGTCGAGGATGATTTCCACCAAATGCAGCAACTGAAAGTCCGAGCAGAAGCTGCTGATGTGGCCAAATCCCAGTTTCTAGCTACTGTTTCACATGAAATTAGAACTCCCATGAATGGGGTCCTTGGGATGCTTGCTTTGCTTCTGGATACAGATTTGAGTTCTACTCAAAGAGACTTTGCTCAGACTGCTCAAGACTGTGGAAAGGCACTAATTAACTTAATAAATGAAGTTCTTGACAGGGCAAAAATCGAAGCTGGCAAGCTAGAGCTTGAGGCAGTCCCCTTTAACCTTCGGTCCATACTAGATGAAGTCCTTTCTTTATTTTCTGAAAAATCTAGGAGCAAAGGTCTCGAGTTGGCAGTGTATGTATCTGATAAAGTTCCAGATATTGTCATGGGAGATCCTGGTAGGTTCCGGCAGGTGATTACAAATCTGGTCGGAAATTCTGTCAAGTTTACTGAGAGAGGACATATATTTGTTCAAGTCCATCTTGCTGAACACGCAAAAGCTGTTCTAGACGCAAAATCCGAAACCTGTTCAAACGTAGGATCGGAAGTCCTAGTTCCGTCCGGTGGTGGTCAGTATAAAACTTTAAGCGGTTGTGAAGTTGCCGACGACCGTAACGGATGGGATACCTTCAAGCATTTAATCACCAATGAAGAATTCAAATACAATACTTCTACTAAATCAACGGCAACTGATGAAACTTCTCAAGATGTTACTTTGATGGTATTCGTCGAGGATACAGGGATCGGGATCCCCTTACGTGCCCAAGAACGGGTTTTTATGCCGTTCATGCAAGCAGACAGTTCTACCTCGAGAAATTATGGTGGGACTGGGATCGGATTGAGCATTAGCAAGTGTCTAGTTGAGCTGATGGGTGGTCGAATAAGCTTTGTTAGTCGACCTCAGGTTGGAAGTACATTTTCTTTCACTGCGGCCTTTAGAACTTGTGATAAAAATGCTGTTGTTGACCCGGAAAAGTCTGTCTCTGATGAATTGCCTGTGGCCTATAAAGGACTTAAAGCAACAGTGGTAGATGAGAAGCCAGTAAGGGCAGCTGTAACTAAGTACCATTTGCAGAGACTTGGGATTATGGTTGAAGTTGTAGGTAGCATCAAGGCTGCATTCATTGTATCCGGCAAAAATGGTTCCACCAAATCTAAATGCAAGTGGCTACCAGATATGATTCTAGTTGAGAAAGATTCATGGTTAACTGGCGAAGATGACGGTTTGGATATAAGAAAGTTCGACTGGAAACAAAACGGACAAATGTTTGATTTGCCTAAAATGTTCCTTCTTGCGACCAATCTTTCAAGTACAGATCTTGAGAAAGCGAAAGCAGCGGGTTTTTCAGATACTGTCATCATGAAGCCTTTGAGGGCAAGCATGGTGGCAGCATGTCTTCAACAGTTTTTTGGAATGGGGAAAACATCGCAACAAGAAAACATGCGTAAAGGATCTGCTTTCCTTCGTAGCCTTCTTTGTGGCAAGAAAATGTTGGTTGTTGATGACAATATGGTGAACCGAAGAGTTGCCGCTGGTGCACTCAAGAAGTTTGGGGCTGATGTAAAGTGTGCTGCGAGTGGCAAAGCTGCTTTATCGTTGCTCGAATTACCTCACGATTTCGATGCTTGCTTCATGGACATTCAAATGCCGGAAATGGATGGTTTTGAGGCAACCCGTCGAATCCGGATGATGGAGAGCAAAGAAAATGAGCAGCAGGGAGAAGGAGAGTGCGTCATAGAAGGAACTACAAAGAAGATGCAATGGCACCTCCCAATATTAGCCATGACAGCTGATGTGATCCACGCCACATATGACGAGTGCCTCAGATGTGGAATGGATGGTTACGTATCAAAACCGTTTGACGAAGAGAATCTTTACCAGGCCGTTGCCAAGTTCTTCGAATCTGAACCAGCTAATTGA

Network for GWHGAAZE012474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03924.14	CHASE	107	287	1.20E-37
PF00512.26	HisKA	377	442	1.60E-16
PF02518.27	HATPase_c	489	670	8.60E-31
PF00072.25	Response_reg	857	924	6.30E-13

Protein Sequence

>GWHPAAZE012481
MGLKMKRNHYVAVRLNEQLGIKRKYTFINRAWLPKILFLWIIFMAFVGRVIYNRMDAENKERRNEVLVSMCDQRARMLQDQFSVSVNHVHALAVLVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAERVVNSKREEFERQHGWTIRTMEKEPSPLRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTNPFKLLGSHHLGVVLTFPVYKSKLPPNPSEEERITATAGYLGGAFDVESLVEKLLGQLAGNQAIVVNVYDITNSSDPLIMYGRQYQDGDFSLSHESALDFGDPFRKHQMICRYLQKAPTSWTAITTASLFFVIGLLVGYMIYGAAIHIVKVEDDFHQMQQLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDFAQTAQDCGKALINLINEVLDRAKIEAGKLELEAVPFNLRSILDEVLSLFSEKSRSKGLELAVYVSDKVPDIVMGDPGRFRQVITNLVGNSVKFTERGHIFVQVHLAEHAKAVLDAKSETCSNVGSEVLVPSGGGQYKTLSGCEVADDRNGWDTFKHLITNEEFKYNTSTKSTATDETSQDVTLMVFVEDTGIGIPLRAQERVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGRISFVSRPQVGSTFSFTAAFRTCDKNAVVDPEKSVSDELPVAYKGLKATVVDEKPVRAAVTKYHLQRLGIMVEVVGSIKAAFIVSGKNGSTKSKCKWLPDMILVEKDSWLTGEDDGLDIRKFDWKQNGQMFDLPKMFLLATNLSSTDLEKAKAAGFSDTVIMKPLRASMVAACLQQFFGMGKTSQQENMRKGSAFLRSLLCGKKMLVVDDNMVNRRVAAGALKKFGADVKCAASGKAALSLLELPHDFDACFMDIQMPEMDGFEATRRIRMMESKENEQQGEGECVIEGTTKKMQWHLPILAMTADVIHATYDECLRCGMDGYVSKPFDEENLYQAVAKFFESEPAN

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14489	AHK2_3_4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0016310	biological_process	phosphorylation
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.377
	SRR3591706	second leaf	30.132
	SRR3591707	mature leaf	72.808
	SRR3591708	Shoot apex	52.679
	SRR3591709	Stem	49.539
	SRR3591710	White floral bud	41.899
	SRR3591711	White flower	44.645
	SRR3591712	Green floral bud	87.555
	SRR3591713	Yellow flower	16.144
SRP173429	SRR8316895	Juvenile bud stage	44.089
	SRR8316896	Juvenile bud stage	65.767
	SRR8316897	Juvenile bud stage	30.245
	SRR8316894	Third green stage	34.718
	SRR8316900	Third green stage	92.736
	SRR8316901	Third green stage	83.030
	SRR8316898	Complete white stage	10.174
	SRR8316899	Complete white stage	77.623
	SRR8316903	Complete white stage	19.318
	SRR8316902	Silver flowering stage	4.820
	SRR8316904	Silver flowering stage	8.266
	SRR8316905	Silver flowering stage	4.194
	SRR8316906	Gold flowering stage	8.918
	SRR8316907	Gold flowering stage	9.125
	SRR8316908	Gold flowering stage	12.595
SRP132670	SRR6706286	Control	77.605
	SRR6706287	Light intensity 50%	84.725
	SRR6706288	Light intensity 20%	83.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.566
	CNS0095593	Slightly white alabastrum(diploid) 2	47.019
	CNS0095594	Slightly white alabastrum(diploid) 3	43.287
	CNS0095595	Whole white alabastrum(diploid) 2	37.464
	CNS0095596	Whole white alabastrum(diploid) 3	33.813
	CNS0095597	Whole white alabastrum(diploid) 4	28.859
	CNS0095598	Silvery flower (diploied) 1	62.126
	CNS0095599	Silvery flower (diploied) 2	44.919
	CNS0095600	Silvery flower (diploied) 3	40.061
	CNS0095601	Golden flower (diploid) 1	57.018
	CNS0095602	Golden flower (diploid) 2	50.761
	CNS0095603	Golden flower (diploid) 3	48.807
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.921
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.158
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.964
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.438
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.535
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.015
	CNS0095610	Silvery flower (tetraploid) 1	10.369
	CNS0095611	Silvery flower (tetraploid) 2	31.121
	CNS0095612	Silvery flower (tetraploid) 3	6.225
	CNS0095613	Golden flower (tetraploid) 1	1.420
	CNS0095614	Golden flower (tetraploid) 2	6.187
	CNS0095615	Golden flower (tetraploid) 3	5.627
CRA001975	CRR073297	Stem 1	94.583
	CRR073298	Stem 2	105.642
	CRR073299	Stem 3	83.523
	CRR073300	Leaf 1	116.042
	CRR073301	Leaf 2	113.607
	CRR073302	Leaf 3	88.341
	CRR073303	Juvenile bud 1	59.058
	CRR073304	Juvenile bud 2	30.707
	CRR073305	Juvenile bud 3	92.860
	CRR073306	Third green 1	2.259
	CRR073307	Third green 2	1.787
	CRR073308	Third green 3	3.644
	CRR073309	Second white 1	0.801
	CRR073310	Second white 2	0.513
	CRR073311	Second white 3	0.395
	CRR073312	Silver flowering 1	0.187
	CRR073313	Silver flowering 2	0.225
	CRR073314	Silver flowering 3	0.296
	CRR073315	Gold flowering 1	35.336
	CRR073316	Gold flowering 2	47.159
	CRR073317	Gold flowering 3	39.391
	CRR073318	Tawny withering 1	21.663
	CRR073319	Tawny withering 2	11.144
	CRR073320	Tawny withering 3	19.655