Detail information of GWHGAAZE012469


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002274655.10PREDICTED: mediator of RNA polymerase II transcription subunit 27 isoform X1 [Vitis vinifera]
Swissprottr|Q8RWM3|MED27_ARATH1E-175Mediator of RNA polymerase II transcription subunit 27
trEMBLtr|D7TL37|D7TL37_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31209.3}
TAIR10AT3G09180.13E-135Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8607805686082704+
GWHAAZE00000003mRNA8607805686082704+
GWHAAZE00000003exon8607805686078338+
GWHAAZE00000003exon8607914386079308+
GWHAAZE00000003exon8608135486081810+
GWHAAZE00000003exon8608207286082131+
GWHAAZE00000003exon8608223886082306+
GWHAAZE00000003exon8608240986082452+
GWHAAZE00000003exon8608252486082704+
GWHAAZE00000003CDS8607805686078338+
GWHAAZE00000003CDS8607914386079308+
GWHAAZE00000003CDS8608135486081810+
GWHAAZE00000003CDS8608207286082131+
GWHAAZE00000003CDS8608223886082306+
GWHAAZE00000003CDS8608240986082452+
GWHAAZE00000003CDS8608252486082704+
Transcript Sequence

Network for GWHGAAZE012469

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11571.9Med272984141.90E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15170MED27 Thyroid hormone signaling pathway map04919

Gene Ontology

GO term OntologyName
GO:0016592cellular_componentmediator complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.467
SRR3591706second leaf15.227
SRR3591707mature leaf12.667
SRR3591708Shoot apex21.543
SRR3591709Stem23.710
SRR3591710White floral bud20.554
SRR3591711White flower32.954
SRR3591712Green floral bud18.327
SRR3591713Yellow flower39.033
SRP173429 SRR8316895Juvenile bud stage 8.604
SRR8316896Juvenile bud stage 11.357
SRR8316897Juvenile bud stage 4.043
SRR8316894Third green stage 5.204
SRR8316900Third green stage 13.241
SRR8316901Third green stage 12.311
SRR8316898Complete white stage 7.172
SRR8316899Complete white stage 20.148
SRR8316903Complete white stage 10.980
SRR8316902Silver flowering stage9.752
SRR8316904Silver flowering stage14.162
SRR8316905Silver flowering stage6.429
SRR8316906Gold flowering stage 24.636
SRR8316907Gold flowering stage 23.132
SRR8316908Gold flowering stage 24.515
SRP132670SRR6706286Control10.744
SRR6706287Light intensity 50%12.069
SRR6706288Light intensity 20%10.920
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.917
CNS0095593Slightly white alabastrum(diploid) 212.161
CNS0095594Slightly white alabastrum(diploid) 313.326
CNS0095595Whole white alabastrum(diploid) 210.461
CNS0095596Whole white alabastrum(diploid) 38.630
CNS0095597Whole white alabastrum(diploid) 410.792
CNS0095598Silvery flower (diploied) 115.003
CNS0095599Silvery flower (diploied) 213.352
CNS0095600Silvery flower (diploied) 319.817
CNS0095601Golden flower (diploid) 112.859
CNS0095602Golden flower (diploid) 220.239
CNS0095603Golden flower (diploid) 321.842
CNS0095604Slightly white alabastrum(tetraploid) 111.053
CNS0095605Slightly white alabastrum(tetraploid) 29.772
CNS0095606Slightly white alabastrum(tetraploid) 314.854
CNS0095607Whole white alabastrum(tetraploid) 18.724
CNS0095608Whole white alabastrum(tetraploid) 27.371
CNS0095609Whole white alabastrum(tetraploid) 310.450
CNS0095610Silvery flower (tetraploid) 115.555
CNS0095611Silvery flower (tetraploid) 222.300
CNS0095612Silvery flower (tetraploid) 315.138
CNS0095613Golden flower (tetraploid) 115.033
CNS0095614Golden flower (tetraploid) 218.987
CNS0095615Golden flower (tetraploid) 332.883
CRA001975CRR073297Stem 111.333
CRR073298Stem 210.510
CRR073299Stem 311.995
CRR073300Leaf 19.955
CRR073301Leaf 29.714
CRR073302Leaf 312.187
CRR073303Juvenile bud 19.782
CRR073304Juvenile bud 210.269
CRR073305Juvenile bud 310.812
CRR073306Third green 16.657
CRR073307Third green 26.061
CRR073308Third green 37.174
CRR073309Second white 19.673
CRR073310Second white 210.488
CRR073311Second white 315.171
CRR073312Silver flowering 111.684
CRR073313Silver flowering 214.375
CRR073314Silver flowering 39.756
CRR073315Gold flowering 18.599
CRR073316Gold flowering 212.030
CRR073317Gold flowering 39.196
CRR073318Tawny withering 19.146
CRR073319Tawny withering 28.105
CRR073320Tawny withering 311.518