Detail information of GWHGAAZE012462


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073823.10PREDICTED: probable importin-7 homolog [Sesamum indicum]
Swissprottr|F4IRR2|SAD2_ARATH0Importin beta-like SAD2 {ECO:0000305}
trEMBLtr|A0A068VG83|A0A068VG83_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_569 {ECO:0000313|EMBL:CDP19617.1}
TAIR10AT2G31660.10ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8593730285947070-
GWHAAZE00000003mRNA8593730285947070-
GWHAAZE00000003exon8594702985947070-
GWHAAZE00000003exon8594534085945475-
GWHAAZE00000003exon8594515985945246-
GWHAAZE00000003exon8594490785945056-
GWHAAZE00000003exon8594426385944425-
GWHAAZE00000003exon8594375585943939-
GWHAAZE00000003exon8594349985943672-
GWHAAZE00000003exon8594297785943122-
GWHAAZE00000003exon8594283885942896-
GWHAAZE00000003exon8594249085942705-
GWHAAZE00000003exon8594192885942087-
GWHAAZE00000003exon8594177685941817-
GWHAAZE00000003exon8594154785941641-
GWHAAZE00000003exon8594125585941453-
GWHAAZE00000003exon8594077085940901-
GWHAAZE00000003exon8594007585940178-
GWHAAZE00000003exon8593975985939938-
GWHAAZE00000003exon8593878285938921-
GWHAAZE00000003exon8593855985938691-
GWHAAZE00000003exon8593754185937670-
GWHAAZE00000003exon8593730285937456-
GWHAAZE00000003CDS8594702985947070-
GWHAAZE00000003CDS8594534085945475-
GWHAAZE00000003CDS8594515985945246-
GWHAAZE00000003CDS8594490785945056-
GWHAAZE00000003CDS8594426385944425-
GWHAAZE00000003CDS8594375585943939-
GWHAAZE00000003CDS8594349985943672-
GWHAAZE00000003CDS8594297785943122-
GWHAAZE00000003CDS8594283885942896-
GWHAAZE00000003CDS8594249085942705-
GWHAAZE00000003CDS8594192885942087-
GWHAAZE00000003CDS8594177685941817-
GWHAAZE00000003CDS8594154785941641-
GWHAAZE00000003CDS8594125585941453-
GWHAAZE00000003CDS8594077085940901-
GWHAAZE00000003CDS8594007585940178-
GWHAAZE00000003CDS8593975985939938-
GWHAAZE00000003CDS8593878285938921-
GWHAAZE00000003CDS8593855985938691-
GWHAAZE00000003CDS8593754185937670-
GWHAAZE00000003CDS8593730285937456-
Transcript Sequence

Network for GWHGAAZE012462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03810.20IBN_N15793.20E-14
PF08506.11Cse11374047.00E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20223IPO7, RANBP7 MAPK signaling pathway - fly map04013

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0008536molecular_functionRan GTPase binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.779
SRR3591706second leaf9.813
SRR3591707mature leaf11.568
SRR3591708Shoot apex18.797
SRR3591709Stem19.910
SRR3591710White floral bud14.873
SRR3591711White flower21.237
SRR3591712Green floral bud39.454
SRR3591713Yellow flower11.006
SRP173429 SRR8316895Juvenile bud stage 18.729
SRR8316896Juvenile bud stage 23.656
SRR8316897Juvenile bud stage 14.363
SRR8316894Third green stage 11.859
SRR8316900Third green stage 36.260
SRR8316901Third green stage 29.036
SRR8316898Complete white stage 3.605
SRR8316899Complete white stage 29.739
SRR8316903Complete white stage 6.627
SRR8316902Silver flowering stage4.659
SRR8316904Silver flowering stage6.729
SRR8316905Silver flowering stage2.302
SRR8316906Gold flowering stage 8.045
SRR8316907Gold flowering stage 7.459
SRR8316908Gold flowering stage 10.612
SRP132670SRR6706286Control24.570
SRR6706287Light intensity 50%24.903
SRR6706288Light intensity 20%29.039
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.511
CNS0095593Slightly white alabastrum(diploid) 215.647
CNS0095594Slightly white alabastrum(diploid) 312.589
CNS0095595Whole white alabastrum(diploid) 214.055
CNS0095596Whole white alabastrum(diploid) 317.256
CNS0095597Whole white alabastrum(diploid) 411.054
CNS0095598Silvery flower (diploied) 113.627
CNS0095599Silvery flower (diploied) 29.711
CNS0095600Silvery flower (diploied) 314.109
CNS0095601Golden flower (diploid) 18.211
CNS0095602Golden flower (diploid) 211.449
CNS0095603Golden flower (diploid) 310.268
CNS0095604Slightly white alabastrum(tetraploid) 118.664
CNS0095605Slightly white alabastrum(tetraploid) 216.382
CNS0095606Slightly white alabastrum(tetraploid) 333.917
CNS0095607Whole white alabastrum(tetraploid) 19.114
CNS0095608Whole white alabastrum(tetraploid) 29.364
CNS0095609Whole white alabastrum(tetraploid) 332.482
CNS0095610Silvery flower (tetraploid) 114.077
CNS0095611Silvery flower (tetraploid) 213.268
CNS0095612Silvery flower (tetraploid) 37.922
CNS0095613Golden flower (tetraploid) 13.613
CNS0095614Golden flower (tetraploid) 210.697
CNS0095615Golden flower (tetraploid) 35.309
CRA001975CRR073297Stem 124.749
CRR073298Stem 220.755
CRR073299Stem 315.692
CRR073300Leaf 125.424
CRR073301Leaf 223.904
CRR073302Leaf 318.137
CRR073303Juvenile bud 123.400
CRR073304Juvenile bud 210.108
CRR073305Juvenile bud 325.799
CRR073306Third green 11.347
CRR073307Third green 20.854
CRR073308Third green 32.243
CRR073309Second white 11.974
CRR073310Second white 22.684
CRR073311Second white 32.078
CRR073312Silver flowering 11.907
CRR073313Silver flowering 21.865
CRR073314Silver flowering 31.926
CRR073315Gold flowering 17.355
CRR073316Gold flowering 213.151
CRR073317Gold flowering 35.322
CRR073318Tawny withering 124.817
CRR073319Tawny withering 216.393
CRR073320Tawny withering 326.450