Gene detail

Detail information of GWHGAAZE012455

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004297799.1	4.65675E-44	PREDICTED: non-specific lipid-transfer protein 4-like isoform 1 [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q8L4P8\|CKB11_ORYSJ	1E-19	Cyclin-dependent kinase B1-1
trEMBL	tr\|D7T8D6\|D7T8D6_VITVI	3E-44	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26757.3}
TAIR10	AT2G37870.1	5E-24	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85819528	85827673	+
GWHAAZE00000003	mRNA	85819528	85827673	+
GWHAAZE00000003	exon	85819528	85819733	+
GWHAAZE00000003	exon	85821741	85821830	+
GWHAAZE00000003	exon	85823556	85823660	+
GWHAAZE00000003	exon	85823739	85823823	+
GWHAAZE00000003	exon	85824532	85824592	+
GWHAAZE00000003	exon	85827248	85827533	+
GWHAAZE00000003	exon	85827616	85827673	+
GWHAAZE00000003	CDS	85819528	85819733	+
GWHAAZE00000003	CDS	85821741	85821830	+
GWHAAZE00000003	CDS	85823556	85823660	+
GWHAAZE00000003	CDS	85823739	85823823	+
GWHAAZE00000003	CDS	85824532	85824592	+
GWHAAZE00000003	CDS	85827248	85827533	+
GWHAAZE00000003	CDS	85827616	85827673	+

Transcript Sequence
>GWHTAAZE012469 ATGCTGGAGGGTTTGCAGTATGAGGGTTTAAAACCTGCATTTGGCACTGATGGAGTGACGGATATGATTTATAAGGCTACGAATCGGGAGACTAAGCATGCGGTAGTTATCAAAGACATTCCCTTTGATGAAAAAGAAGGTCTTCCAGTCGAGATAAAGAGAGAAATATCTTCTTTACAGAGCGTACATCATGAAAACATTGTGAGCTTGTTGGAAGTAGTTTATCAGACTACGGAGGTGCGGCTTATCTTTGAGGCATTGGATGGTGATCTAAAGACTCACTTGGAGACACATCGTGCAATCGATATATGGTCTTTGGGCTGTATATTTGCAGAGATGCTCAATGGACAGCAGCTTTTCGATGGTGCAGGTGTGATTCAGCAGCTCCAGAGTATCATCAGTATTATGGGTACGCCTACAGTGGATACTTGGCCTGGAGTGACACAGTCTACTGTGCTTCCGCACCTACCAGCCATTCAATCCCAGGACCTAGCGAGCTTCGTTCATCCAAGTCTTACACCAGAAGGAGTTGATCTCCTATCGGTAATTTCGCAAGCTTTTGTTCACAAAGTCCACGGGGCCGGTGAATGCGGGCGAACCCCAATTCCGACCGCGGCTGCTAGTTTAAGCCCGTGCTTGAGCGTGGCTAAGAACGCAAGCGCTAAGGTTCCACCCATGTGTTGTGCTAAAGTTGGTGCATTGATAAAGACCGCACCTAAATGCTTATGTGCCGTGTTGTTGTCGCCATTGGCTAAGAAAGCTGGTATTAACCCCGGCATCGCAATTGCTATTCCAAAGCGTTGCAACATTAGGAACAGGCCGGTTGGAAAGAACCACGGTTTTATCTCTGTGTTGTCTAAGGTGGAAGCTACTTTTGAACGAGCAGAGTAA

Network for GWHGAAZE012455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	18	99	3.90E-10
PF14368.7	LTP_2	194	274	8.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	151.126
	SRR3591706	second leaf	57.874
	SRR3591707	mature leaf	16.532
	SRR3591708	Shoot apex	59.614
	SRR3591709	Stem	356.591
	SRR3591710	White floral bud	59.258
	SRR3591711	White flower	38.269
	SRR3591712	Green floral bud	49.600
	SRR3591713	Yellow flower	12.083
SRP173429	SRR8316895	Juvenile bud stage	15.716
	SRR8316896	Juvenile bud stage	15.508
	SRR8316897	Juvenile bud stage	10.764
	SRR8316894	Third green stage	11.912
	SRR8316900	Third green stage	52.711
	SRR8316901	Third green stage	36.340
	SRR8316898	Complete white stage	22.261
	SRR8316899	Complete white stage	76.353
	SRR8316903	Complete white stage	30.087
	SRR8316902	Silver flowering stage	17.589
	SRR8316904	Silver flowering stage	18.746
	SRR8316905	Silver flowering stage	5.710
	SRR8316906	Gold flowering stage	11.215
	SRR8316907	Gold flowering stage	19.420
	SRR8316908	Gold flowering stage	20.765
SRP132670	SRR6706286	Control	41.259
	SRR6706287	Light intensity 50%	28.160
	SRR6706288	Light intensity 20%	27.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.945
	CNS0095593	Slightly white alabastrum(diploid) 2	32.427
	CNS0095594	Slightly white alabastrum(diploid) 3	19.655
	CNS0095595	Whole white alabastrum(diploid) 2	24.157
	CNS0095596	Whole white alabastrum(diploid) 3	24.099
	CNS0095597	Whole white alabastrum(diploid) 4	17.020
	CNS0095598	Silvery flower (diploied) 1	22.833
	CNS0095599	Silvery flower (diploied) 2	23.448
	CNS0095600	Silvery flower (diploied) 3	18.587
	CNS0095601	Golden flower (diploid) 1	9.097
	CNS0095602	Golden flower (diploid) 2	7.621
	CNS0095603	Golden flower (diploid) 3	7.483
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.940
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.666
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.372
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.159
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.797
	CNS0095610	Silvery flower (tetraploid) 1	25.021
	CNS0095611	Silvery flower (tetraploid) 2	9.613
	CNS0095612	Silvery flower (tetraploid) 3	11.464
	CNS0095613	Golden flower (tetraploid) 1	7.188
	CNS0095614	Golden flower (tetraploid) 2	8.753
	CNS0095615	Golden flower (tetraploid) 3	5.593
CRA001975	CRR073297	Stem 1	17.889
	CRR073298	Stem 2	14.375
	CRR073299	Stem 3	30.901
	CRR073300	Leaf 1	22.852
	CRR073301	Leaf 2	34.663
	CRR073302	Leaf 3	41.386
	CRR073303	Juvenile bud 1	49.196
	CRR073304	Juvenile bud 2	30.232
	CRR073305	Juvenile bud 3	43.451
	CRR073306	Third green 1	12.256
	CRR073307	Third green 2	26.366
	CRR073308	Third green 3	12.613
	CRR073309	Second white 1	1.588
	CRR073310	Second white 2	4.253
	CRR073311	Second white 3	0.849
	CRR073312	Silver flowering 1	0.329
	CRR073313	Silver flowering 2	0.698
	CRR073314	Silver flowering 3	1.213
	CRR073315	Gold flowering 1	3.241
	CRR073316	Gold flowering 2	6.989
	CRR073317	Gold flowering 3	5.318
	CRR073318	Tawny withering 1	16.392
	CRR073319	Tawny withering 2	26.042
	CRR073320	Tawny withering 3	32.037