Gene detail

Detail information of GWHGAAZE012430

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654637.1	0	PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 [Vitis vinifera]
Swissprot	tr\|Q84MA9\|Y1063_ARATH	5E-162	Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 (Precursor)
trEMBL	tr\|F6HG08\|F6HG08_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51201.1}
TAIR10	AT1G10850.1	5E-115	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85298236	85299489	-
GWHAAZE00000003	mRNA	85298236	85299489	-
GWHAAZE00000003	exon	85298236	85299489	-
GWHAAZE00000003	CDS	85298236	85299489	-

Transcript Sequence
>GWHTAAZE012444 ATGAGCGATGCCGAAGCTCTTCTATCCTTAAAATCCTCAATTGATCCGTTCAACTCGCTCCAATGGCGAGGCAACGATGCTTGCAAATGGCAAGGAGTCAAAGAATGTATGCGAGGAAGAGTTACAAAGCTTGTGTTGGAGCACTTGAACTTGACCGGATCCTTAAGAGAGACAAGCCTCAATCAATTAGACCAACTCCGTGTTCTAAGCTTCAAAGACAACTCCTTTTCCGGCCAAATCCCTAACCTCACCGCCCTCGTAAACCTAAAGTCTCTCTATCTCAACCACAACAACTTCTCCGGCGAGTTTCCGACCTACATTTCACTATTCCACCGCCTCAAAATCATAGTCCTCTCCGACAACCAAATCTCCGGTCGCATTCCTAGTTCACTCCTCAATCTACGGCGACTTTACGTCCTTTACTTACAGGACAATCAATTCACCGGAGAGATTCCTCCGTTGAACCAATCCACTCTCAGGTACTTAAACCTTTCCAACAATCATCTCTCCGGCGAGATTCCGGTTACGCCTGCTTTGATCCGATTCAATTCCTCTTCATTTTCCGGTAACATCAACCTTTGCGGCGAGCAAATTAATCGTCAATGCAACGAGAACACTTCTTCTGTTCCAGCAATTAGTCCATCGTACAACGGTAAGTCGAGTAAAAATCATCCAAAGCGGTGGAAACTTATAGCTATAATAGCCGGAAGCGTTGGTGGCATTTTGTTACTTATCATATTAATTCTATTACTTATGATTCGTATGAAGAAGAGGAAAACAACGGAGGTTAGGGGTAAAGGAGTTTCCGGTGGCCGAGTGGGGGTGGAAGGCGGCGGCGGTGGCGGTAGTGGCAGAGGAGGTAATAATGCCGGAAAAGAAGGGGGGTTAAACTGGGAAGGGGGTGAGGGTGTAGGGAGTTTGGTGTTCTGCGGAGGAGGGGATAATTTGGAGATGAGTTATGGTTTGGAGGAGTTGCTGAAGGCTACGGCGGAGACGTTGGGGAGGGGCACGGTGGGGAGCACCTACAAGGCGGTGATGGAGTCGGGTTTTATTGTGACGGTGAAGAGGTTGAAGGACGCCAAGTATCCGAGGGTGGAGGATTTTGTGAGACAGGTGGAGCTCATCGGGAAGCTAAGGCATCCTAATTTGGTCCCACTCAGGGCTTATTTCCAGGCTAAGGAGGAACGGCTCCTCGTATATGATTACTTACCCAACGGCAGTCTTTTCTCGTTAATTCATGGTACGTTTTGCTGA

Network for GWHGAAZE012430

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	2	33	3.00E-05
PF00560.34	LRR_1	88	106	1.4
PF00560.34	LRR_1	159	174	0.6
PF00069.26	Pkinase	330	413	2.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.834
	SRR3591706	second leaf	1.224
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	6.071
	SRR3591709	Stem	0.982
	SRR3591710	White floral bud	0.725
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	2.535
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.048
	SRR8316896	Juvenile bud stage	5.233
	SRR8316897	Juvenile bud stage	2.381
	SRR8316894	Third green stage	3.184
	SRR8316900	Third green stage	13.976
	SRR8316901	Third green stage	9.470
	SRR8316898	Complete white stage	0.216
	SRR8316899	Complete white stage	3.905
	SRR8316903	Complete white stage	0.325
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	10.791
	SRR6706287	Light intensity 50%	9.141
	SRR6706288	Light intensity 20%	11.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.120
	CNS0095593	Slightly white alabastrum(diploid) 2	4.667
	CNS0095594	Slightly white alabastrum(diploid) 3	2.622
	CNS0095595	Whole white alabastrum(diploid) 2	4.418
	CNS0095596	Whole white alabastrum(diploid) 3	3.145
	CNS0095597	Whole white alabastrum(diploid) 4	0.927
	CNS0095598	Silvery flower (diploied) 1	0.885
	CNS0095599	Silvery flower (diploied) 2	0.918
	CNS0095600	Silvery flower (diploied) 3	0.543
	CNS0095601	Golden flower (diploid) 1	0.320
	CNS0095602	Golden flower (diploid) 2	0.929
	CNS0095603	Golden flower (diploid) 3	0.447
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.258
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.344
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.487
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.153
	CNS0095612	Silvery flower (tetraploid) 3	0.250
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	13.983
	CRR073298	Stem 2	16.180
	CRR073299	Stem 3	15.275
	CRR073300	Leaf 1	17.492
	CRR073301	Leaf 2	20.242
	CRR073302	Leaf 3	15.553
	CRR073303	Juvenile bud 1	6.198
	CRR073304	Juvenile bud 2	3.610
	CRR073305	Juvenile bud 3	9.285
	CRR073306	Third green 1	0.234
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.299
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.036
	CRR073311	Second white 3	0.038
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.037
	CRR073316	Gold flowering 2	0.173
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.273
	CRR073319	Tawny withering 2	3.102
	CRR073320	Tawny withering 3	2.868