Gene detail

Detail information of GWHGAAZE012429

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80935.1	5.7373E-118	hypothetical protein VITISV_005661 [Vitis vinifera]
Swissprot	tr\|Q84MA9\|Y1063_ARATH	2E-89	Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 (Precursor)
trEMBL	tr\|M1CJI6\|M1CJI6_SOLTU	1E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068806}
TAIR10	AT1G10850.1	6E-77	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85291633	85292502	-
GWHAAZE00000003	mRNA	85291633	85292502	-
GWHAAZE00000003	exon	85291633	85292297	-
GWHAAZE00000003	exon	85292460	85292502	-
GWHAAZE00000003	CDS	85292460	85292502	-
GWHAAZE00000003	CDS	85291633	85292297	-

Transcript Sequence
>GWHTAAZE012443 ATGTATATGAAACTAGCGGAACCACAGAGTAGTGAATCAGCCAGTACAAGAAGTTCAGCCAGTGGAAAACCACTTCACTGGACATCATGCCTCAAGATAGCAGAGGACCTGGCCACTGGTCTCCTGTACATCCACCAACACCACCCCGGCCTAACCCACGGCAACCTCAAATCCTCAAACGTCCTCCTCGGCTCAGACTTCGAGTCCTGCCTCACCGACTACGCCCTCATACCCTTCATAAACCCGGACTCACCTGACTCATCCAACTCCTCCTCTTCCCTCTTCTACCAAGCACCCGAGTGTCGCCACCCCAATACCCCACCCACCCAACAAGCTGACGTGTACAGCTTCGGTGTCCTCCTCCTAGAGCTCCTCACCGGCAAGACCCCCTTCCGGGACCTCGTTCAAGACCACGGCTCTGACATTCCGGCCTGGGTCCGCTCGGTCCGGGAGGAAGAGACCGAGTTGGGCGATGAGCCCAGTTCGAGCAATGAGGGGTCTGAGGTGAAACTCGGGGCTCTTTTGAACATTGCAATGGCTTGTGTGGCAATTGGACCGGAGAACCGGCCTAGAATGAGGGAAGTTTTGAGGATGGTTAGGGAGACGAGAGCGGAAGCTCAAGCATCTTCTAATAGCAGCGATCATTCACCGGGGAGATGGTCGGATACCGTTCTGAGTGTGCCGAGGGAGGGGCATGTAAGCATATGA

Network for GWHGAAZE012429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	25	197	2.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.581
	SRR3591706	second leaf	2.319
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	7.170
	SRR3591709	Stem	1.615
	SRR3591710	White floral bud	0.763
	SRR3591711	White flower	0.045
	SRR3591712	Green floral bud	4.860
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.018
	SRR8316896	Juvenile bud stage	6.368
	SRR8316897	Juvenile bud stage	3.086
	SRR8316894	Third green stage	2.848
	SRR8316900	Third green stage	12.361
	SRR8316901	Third green stage	12.190
	SRR8316898	Complete white stage	0.142
	SRR8316899	Complete white stage	4.261
	SRR8316903	Complete white stage	0.347
	SRR8316902	Silver flowering stage	0.102
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	10.397
	SRR6706287	Light intensity 50%	10.105
	SRR6706288	Light intensity 20%	11.628
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.426
	CNS0095593	Slightly white alabastrum(diploid) 2	8.916
	CNS0095594	Slightly white alabastrum(diploid) 3	9.144
	CNS0095595	Whole white alabastrum(diploid) 2	6.182
	CNS0095596	Whole white alabastrum(diploid) 3	7.437
	CNS0095597	Whole white alabastrum(diploid) 4	4.618
	CNS0095598	Silvery flower (diploied) 1	1.950
	CNS0095599	Silvery flower (diploied) 2	0.942
	CNS0095600	Silvery flower (diploied) 3	0.673
	CNS0095601	Golden flower (diploid) 1	0.724
	CNS0095602	Golden flower (diploid) 2	0.108
	CNS0095603	Golden flower (diploid) 3	0.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.638
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.033
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.861
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.273
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.062
	CNS0095612	Silvery flower (tetraploid) 3	0.151
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	12.446
	CRR073298	Stem 2	20.252
	CRR073299	Stem 3	18.387
	CRR073300	Leaf 1	16.714
	CRR073301	Leaf 2	24.611
	CRR073302	Leaf 3	17.718
	CRR073303	Juvenile bud 1	9.037
	CRR073304	Juvenile bud 2	4.737
	CRR073305	Juvenile bud 3	10.525
	CRR073306	Third green 1	0.201
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.063
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.008
	CRR073312	Silver flowering 1	0.133
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	6.900
	CRR073319	Tawny withering 2	3.953
	CRR073320	Tawny withering 3	6.633