Gene detail

Detail information of GWHGAAZE012427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006484645.1	2.0311E-177	PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Citrus sinensis]
Swissprot	tr\|O49561\|G2OX8_ARATH	1E-125	Gibberellin 2-beta-dioxygenase 8
trEMBL	tr\|F6HG07\|F6HG07_VITVI	2E-177	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51200.1}
TAIR10	AT4G21200.1	4E-102	gibberellin 2-oxidase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85260479	85262069	+
GWHAAZE00000003	mRNA	85260479	85262069	+
GWHAAZE00000003	exon	85260479	85260936	+
GWHAAZE00000003	exon	85261200	85261521	+
GWHAAZE00000003	exon	85261824	85262069	+
GWHAAZE00000003	CDS	85260479	85260936	+
GWHAAZE00000003	CDS	85261200	85261521	+
GWHAAZE00000003	CDS	85261824	85262069	+

Transcript Sequence
>GWHTAAZE012441 GAGAGAATGATTGAATTCGACCAGAACCCACCTCTCCTCCGCAAATATGCAGAACTAGTATGCAACTCTGGAGAGAATTATGTGGCTAATTGCAACGAATCAGTAATGAAGGAATGTGAACTCCCATTAATAGACCTTGGTGGTTTAACAAGTGAAAACAAAGAAGAAAGAGATTCTTGTGCTAAGGCTATATGCAGAGCTTCATCAGAATGGGGATTCTTCCAAGTGGTGAACCATGGAATTAACCTTCAACTACTGAGGAAGATGAGAGGAGAGCAAGTTAAATTGTTTGAATTTCCCTTTGAAAAGAAGGTTACTTGTGGCCATTTCAATAATTCTTACAGGTGGGGAAACAGAACAGCCACATGCCCAAAACAGTTCTCCTGGTCCGAGGCTTTCCACGTACCTCTAAATAAGATCTCAGAGGAGCCTTCTTATGGCGAATTCGGCTCTGTAAGGGCAGTGATGCAAGAATATGCAGCTGCAATGCAAGAACTAGCTAGGCTGCTGAGTAGGGTTCTGGTTAATAATTTGGGTCACAAAAAGGGACTTTTAGAAGAAATTTGTGACGAAAGCACTTGCTTTCTTCGATTAAACAGATACCCTGCATGCCCGATATCACCGGAGATATTCGGACTGGTTCCCCACACAGACAGTGATTTTCTTACAATCCTTCACCAAGACCAAGTTGGTGGACTTCAGCTCATGAAAGATTCCAGATGGGTCGCCGTTAAGCCTAACCAAGACACTCTTATCGTCAATATTGGAGATCTTTTCCAGGCATGGAGCAATGATGTGTACAAGAGTGTGGAGCATAAGGTGATGGTAAATGCAAAGATGGAGAGATACTCAATAGCCTACTTTGTGTGCCCTTCTTATGAATCTACAATTGGGAGCTGTAAAGAACCAACCATTTATAGAAGTTTCACCTTTGGAGAATACAGAAGCCAGATTCAGCAAGATGTTAAAAAGACCGGACATAAAGTTGGTCTTCCAAGGTTTCTCCTTCACAGCCAATTGATGTGA

Network for GWHGAAZE012427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	41	143	4.30E-17
PF03171.21	2OG-FeII_Oxy	196	291	9.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.081
	SRR3591706	second leaf	0.551
	SRR3591707	mature leaf	1.137
	SRR3591708	Shoot apex	1.021
	SRR3591709	Stem	2.276
	SRR3591710	White floral bud	2.271
	SRR3591711	White flower	2.832
	SRR3591712	Green floral bud	1.528
	SRR3591713	Yellow flower	2.110
SRP173429	SRR8316895	Juvenile bud stage	0.456
	SRR8316896	Juvenile bud stage	0.891
	SRR8316897	Juvenile bud stage	0.322
	SRR8316894	Third green stage	0.815
	SRR8316900	Third green stage	1.093
	SRR8316901	Third green stage	1.453
	SRR8316898	Complete white stage	0.473
	SRR8316899	Complete white stage	1.764
	SRR8316903	Complete white stage	1.009
	SRR8316902	Silver flowering stage	1.745
	SRR8316904	Silver flowering stage	1.605
	SRR8316905	Silver flowering stage	0.667
	SRR8316906	Gold flowering stage	2.779
	SRR8316907	Gold flowering stage	2.166
	SRR8316908	Gold flowering stage	2.303
SRP132670	SRR6706286	Control	0.492
	SRR6706287	Light intensity 50%	0.828
	SRR6706288	Light intensity 20%	0.887
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.517
	CNS0095593	Slightly white alabastrum(diploid) 2	0.291
	CNS0095594	Slightly white alabastrum(diploid) 3	1.035
	CNS0095595	Whole white alabastrum(diploid) 2	0.605
	CNS0095596	Whole white alabastrum(diploid) 3	0.798
	CNS0095597	Whole white alabastrum(diploid) 4	0.693
	CNS0095598	Silvery flower (diploied) 1	0.966
	CNS0095599	Silvery flower (diploied) 2	0.761
	CNS0095600	Silvery flower (diploied) 3	2.046
	CNS0095601	Golden flower (diploid) 1	0.634
	CNS0095602	Golden flower (diploid) 2	1.492
	CNS0095603	Golden flower (diploid) 3	2.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.562
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.539
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.389
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.323
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.760
	CNS0095610	Silvery flower (tetraploid) 1	3.425
	CNS0095611	Silvery flower (tetraploid) 2	2.590
	CNS0095612	Silvery flower (tetraploid) 3	3.762
	CNS0095613	Golden flower (tetraploid) 1	2.026
	CNS0095614	Golden flower (tetraploid) 2	3.992
	CNS0095615	Golden flower (tetraploid) 3	3.161
CRA001975	CRR073297	Stem 1	1.826
	CRR073298	Stem 2	1.261
	CRR073299	Stem 3	0.411
	CRR073300	Leaf 1	1.419
	CRR073301	Leaf 2	1.260
	CRR073302	Leaf 3	0.061
	CRR073303	Juvenile bud 1	0.740
	CRR073304	Juvenile bud 2	0.055
	CRR073305	Juvenile bud 3	0.130
	CRR073306	Third green 1	0.127
	CRR073307	Third green 2	0.369
	CRR073308	Third green 3	0.200
	CRR073309	Second white 1	0.076
	CRR073310	Second white 2	0.335
	CRR073311	Second white 3	0.256
	CRR073312	Silver flowering 1	0.252
	CRR073313	Silver flowering 2	0.019
	CRR073314	Silver flowering 3	0.091
	CRR073315	Gold flowering 1	0.066
	CRR073316	Gold flowering 2	0.378
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.379
	CRR073319	Tawny withering 2	0.723
	CRR073320	Tawny withering 3	1.456