Detail information of GWHGAAZE012414


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18136.10unnamed protein product [Coffea canephora]
Swissprottr|Q40541|NPK1_TOBAC1E-66Mitogen-activated protein kinase kinase kinase NPK1
trEMBLtr|A0A068VBN2|A0A068VBN2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_216 {ECO:0000313|EMBL:CDP18136.1}
TAIR10AT3G13530.10mitogen-activated protein kinase kinase kinase 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8507450785088886-
GWHAAZE00000003mRNA8507450785088886-
GWHAAZE00000003exon8508875285088886-
GWHAAZE00000003exon8508689985086972-
GWHAAZE00000003exon8508671085086800-
GWHAAZE00000003exon8508654985086632-
GWHAAZE00000003exon8508632585086426-
GWHAAZE00000003exon8508445285084583-
GWHAAZE00000003exon8508415685084227-
GWHAAZE00000003exon8508325985083362-
GWHAAZE00000003exon8508148685081573-
GWHAAZE00000003exon8508097285081364-
GWHAAZE00000003exon8507997785080309-
GWHAAZE00000003exon8507983885079882-
GWHAAZE00000003exon8507897185079150-
GWHAAZE00000003exon8507872985078812-
GWHAAZE00000003exon8507835485078445-
GWHAAZE00000003exon8507817485078257-
GWHAAZE00000003exon8507710385077932-
GWHAAZE00000003exon8507653485076922-
GWHAAZE00000003exon8507631985076453-
GWHAAZE00000003exon8507553985075945-
GWHAAZE00000003exon8507528585075399-
GWHAAZE00000003exon8507450785074683-
GWHAAZE00000003CDS8508875285088886-
GWHAAZE00000003CDS8508689985086972-
GWHAAZE00000003CDS8508671085086800-
GWHAAZE00000003CDS8508654985086632-
GWHAAZE00000003CDS8508632585086426-
GWHAAZE00000003CDS8508445285084583-
GWHAAZE00000003CDS8508415685084227-
GWHAAZE00000003CDS8508325985083362-
GWHAAZE00000003CDS8508148685081573-
GWHAAZE00000003CDS8508097285081364-
GWHAAZE00000003CDS8507997785080309-
GWHAAZE00000003CDS8507983885079882-
GWHAAZE00000003CDS8507897185079150-
GWHAAZE00000003CDS8507872985078812-
GWHAAZE00000003CDS8507835485078445-
GWHAAZE00000003CDS8507817485078257-
GWHAAZE00000003CDS8507710385077932-
GWHAAZE00000003CDS8507653485076922-
GWHAAZE00000003CDS8507631985076453-
GWHAAZE00000003CDS8507553985075945-
GWHAAZE00000003CDS8507528585075399-
GWHAAZE00000003CDS8507450785074683-
Transcript Sequence

Network for GWHGAAZE012414

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase42472.60E-67
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilySTE_STE-Pl

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.349
SRR3591706second leaf16.468
SRR3591707mature leaf12.762
SRR3591708Shoot apex27.756
SRR3591709Stem23.257
SRR3591710White floral bud17.538
SRR3591711White flower17.350
SRR3591712Green floral bud18.818
SRR3591713Yellow flower12.006
SRP173429 SRR8316895Juvenile bud stage 12.707
SRR8316896Juvenile bud stage 17.256
SRR8316897Juvenile bud stage 8.993
SRR8316894Third green stage 8.118
SRR8316900Third green stage 17.800
SRR8316901Third green stage 15.997
SRR8316898Complete white stage 5.344
SRR8316899Complete white stage 17.418
SRR8316903Complete white stage 9.067
SRR8316902Silver flowering stage4.863
SRR8316904Silver flowering stage9.463
SRR8316905Silver flowering stage4.397
SRR8316906Gold flowering stage 13.311
SRR8316907Gold flowering stage 9.786
SRR8316908Gold flowering stage 11.685
SRP132670SRR6706286Control17.731
SRR6706287Light intensity 50%18.098
SRR6706288Light intensity 20%19.290
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.576
CNS0095593Slightly white alabastrum(diploid) 27.500
CNS0095594Slightly white alabastrum(diploid) 36.574
CNS0095595Whole white alabastrum(diploid) 27.029
CNS0095596Whole white alabastrum(diploid) 37.104
CNS0095597Whole white alabastrum(diploid) 46.826
CNS0095598Silvery flower (diploied) 110.014
CNS0095599Silvery flower (diploied) 211.852
CNS0095600Silvery flower (diploied) 314.306
CNS0095601Golden flower (diploid) 19.278
CNS0095602Golden flower (diploid) 216.430
CNS0095603Golden flower (diploid) 316.098
CNS0095604Slightly white alabastrum(tetraploid) 110.783
CNS0095605Slightly white alabastrum(tetraploid) 29.167
CNS0095606Slightly white alabastrum(tetraploid) 323.614
CNS0095607Whole white alabastrum(tetraploid) 110.518
CNS0095608Whole white alabastrum(tetraploid) 27.529
CNS0095609Whole white alabastrum(tetraploid) 315.154
CNS0095610Silvery flower (tetraploid) 111.331
CNS0095611Silvery flower (tetraploid) 213.397
CNS0095612Silvery flower (tetraploid) 310.141
CNS0095613Golden flower (tetraploid) 15.074
CNS0095614Golden flower (tetraploid) 210.075
CNS0095615Golden flower (tetraploid) 310.735
CRA001975CRR073297Stem 123.891
CRR073298Stem 223.328
CRR073299Stem 320.936
CRR073300Leaf 123.707
CRR073301Leaf 218.551
CRR073302Leaf 316.163
CRR073303Juvenile bud 116.282
CRR073304Juvenile bud 211.193
CRR073305Juvenile bud 323.036
CRR073306Third green 16.047
CRR073307Third green 25.835
CRR073308Third green 36.934
CRR073309Second white 17.154
CRR073310Second white 27.437
CRR073311Second white 39.659
CRR073312Silver flowering 18.830
CRR073313Silver flowering 29.133
CRR073314Silver flowering 38.444
CRR073315Gold flowering 14.225
CRR073316Gold flowering 29.126
CRR073317Gold flowering 36.631
CRR073318Tawny withering 116.003
CRR073319Tawny withering 212.634
CRR073320Tawny withering 317.889