Detail information of GWHGAAZE012400


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_196446.17.2641E-102thioredoxin-like protein YLS8 [Arabidopsis thaliana]
Swissprottr|Q9FE62|YLS8_ARATH3E-104Thioredoxin-like protein YLS8
trEMBLtr|V7BQW0|V7BQW0_PHAVU3E-102Uncharacterized protein {ECO:0000313|EMBL:ESW19403.1}
TAIR10AT5G08290.11E-81mRNA splicing factor, thioredoxin-like U5 snRNP

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8486895284871078-
GWHAAZE00000003mRNA8486895284871078-
GWHAAZE00000003exon8486895284869260-
GWHAAZE00000003exon8487095984871078-
GWHAAZE00000003CDS8487095984871078-
GWHAAZE00000003CDS8486895284869260-
Transcript Sequence

Network for GWHGAAZE012400

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02966.17DIM141361.10E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12859TXNL4A, DIB1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398biological_processmRNA splicing, via spliceosome
GO:0046540cellular_componentU4/U6 x U5 tri-snRNP complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf273.979
SRR3591706second leaf133.862
SRR3591707mature leaf137.227
SRR3591708Shoot apex235.991
SRR3591709Stem283.650
SRR3591710White floral bud350.307
SRR3591711White flower480.591
SRR3591712Green floral bud352.894
SRR3591713Yellow flower462.785
SRP173429 SRR8316895Juvenile bud stage 172.163
SRR8316896Juvenile bud stage 256.469
SRR8316897Juvenile bud stage 103.915
SRR8316894Third green stage 91.924
SRR8316900Third green stage 415.188
SRR8316901Third green stage 372.721
SRR8316898Complete white stage 240.789
SRR8316899Complete white stage 532.467
SRR8316903Complete white stage 343.557
SRR8316902Silver flowering stage326.425
SRR8316904Silver flowering stage332.039
SRR8316905Silver flowering stage218.502
SRR8316906Gold flowering stage 764.967
SRR8316907Gold flowering stage 868.139
SRR8316908Gold flowering stage 764.321
SRP132670SRR6706286Control569.344
SRR6706287Light intensity 50%587.877
SRR6706288Light intensity 20%624.167
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1272.726
CNS0095593Slightly white alabastrum(diploid) 2343.544
CNS0095594Slightly white alabastrum(diploid) 3284.455
CNS0095595Whole white alabastrum(diploid) 2285.453
CNS0095596Whole white alabastrum(diploid) 3311.156
CNS0095597Whole white alabastrum(diploid) 4265.202
CNS0095598Silvery flower (diploied) 1345.842
CNS0095599Silvery flower (diploied) 2330.387
CNS0095600Silvery flower (diploied) 3556.940
CNS0095601Golden flower (diploid) 1342.519
CNS0095602Golden flower (diploid) 2508.186
CNS0095603Golden flower (diploid) 3502.788
CNS0095604Slightly white alabastrum(tetraploid) 1281.390
CNS0095605Slightly white alabastrum(tetraploid) 2275.632
CNS0095606Slightly white alabastrum(tetraploid) 3428.424
CNS0095607Whole white alabastrum(tetraploid) 1224.138
CNS0095608Whole white alabastrum(tetraploid) 2227.607
CNS0095609Whole white alabastrum(tetraploid) 3409.748
CNS0095610Silvery flower (tetraploid) 1657.629
CNS0095611Silvery flower (tetraploid) 2538.867
CNS0095612Silvery flower (tetraploid) 3623.805
CNS0095613Golden flower (tetraploid) 1662.149
CNS0095614Golden flower (tetraploid) 2684.834
CNS0095615Golden flower (tetraploid) 3534.945
CRA001975CRR073297Stem 1291.577
CRR073298Stem 2318.599
CRR073299Stem 3376.160
CRR073300Leaf 1357.716
CRR073301Leaf 2407.309
CRR073302Leaf 3450.264
CRR073303Juvenile bud 1498.016
CRR073304Juvenile bud 2574.290
CRR073305Juvenile bud 3448.190
CRR073306Third green 1551.234
CRR073307Third green 2584.163
CRR073308Third green 3485.776
CRR073309Second white 1782.684
CRR073310Second white 2491.745
CRR073311Second white 3357.424
CRR073312Silver flowering 1458.041
CRR073313Silver flowering 2625.544
CRR073314Silver flowering 3377.387
CRR073315Gold flowering 1232.539
CRR073316Gold flowering 2233.174
CRR073317Gold flowering 3221.333
CRR073318Tawny withering 1295.218
CRR073319Tawny withering 2286.320
CRR073320Tawny withering 3285.900