Gene detail

Detail information of GWHGAAZE012386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009786440.1	3.1144E-146	PREDICTED: superoxide dismutase [Fe] 3, chloroplastic isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q9FMX0\|SODF3_ARATH	2E-130	Superoxide dismutase [Fe] 3, chloroplastic (Precursor)
trEMBL	tr\|K4B4W4\|K4B4W4_SOLLC	4E-136	Superoxide dismutase {ECO:0000256\|RuleBase:RU000414}
TAIR10	AT5G23310.1	3E-104	Fe superoxide dismutase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84710398	84714368	-
GWHAAZE00000003	mRNA	84710398	84714368	-
GWHAAZE00000003	exon	84714273	84714368	-
GWHAAZE00000003	exon	84713049	84713138	-
GWHAAZE00000003	exon	84712125	84712316	-
GWHAAZE00000003	exon	84711338	84711509	-
GWHAAZE00000003	exon	84710850	84710923	-
GWHAAZE00000003	exon	84710713	84710739	-
GWHAAZE00000003	exon	84710613	84710636	-
GWHAAZE00000003	exon	84710398	84710523	-
GWHAAZE00000003	CDS	84714273	84714368	-
GWHAAZE00000003	CDS	84713049	84713138	-
GWHAAZE00000003	CDS	84712125	84712316	-
GWHAAZE00000003	CDS	84711338	84711509	-
GWHAAZE00000003	CDS	84710850	84710923	-
GWHAAZE00000003	CDS	84710713	84710739	-
GWHAAZE00000003	CDS	84710613	84710636	-
GWHAAZE00000003	CDS	84710398	84710523	-

Transcript Sequence
>GWHTAAZE012400 ATGAGTTGGTCCTGTTGTAACAATCTTAGTTTTTCATCCTCTCTTCTTGGGACTGATGAGTCTAAGCTGTTGAAGAGACCCAAGTCATCTTATCCGGGTCAGCAACAAAACAGGGTGTTGTATGGGTCCAACAGGACAGCAAAAGTTCATGCTTATTATGGTCTGAGGACTCCCCCTTATAAACTTGAAGCTCTAGAACCATATATGAGCAAGAGAACGCTCGAGATTCACTGGGGAGAGCACCATCGTGGTTATGTAGAAAGTCTGAACAAACAGCTTGAGAAGAATGATTTAATGTATGGATACACCATGAATGAACTTATCAAAGTGACATATAACAACGGCAGTCCATTACCCGAATTCAACAATGCTGCCCAGGTTTGGAATCATGATTTCTTTTGGGAATCAATGCAACCAGGAGGTGGTAAAATGCCCATATTGCAGCTGCTTCAGCAAATTGAAAAGGATTTTGGTTCTTTCACAAATTTGAGAGAGAAGTTCATGGAAGCAGCACTCACTCTATTTGGATCTGGTTGGATTTGGCTTGTCTTGAAGAAGGAAGAGGGACGCCTTGCAGTTGTTAAAACAACAAATGCCATAAACCCACTTTTGTGGGATGACATTCCTCTCATCAGTTTGGATATGTGGGAGCATGCTTACTATTTGGATTACAAGAATGACAAAGAAAAGTATGCGACGGCGTTTTTGAATCACCTTGTATCTTGGGACTCGGCAATGGTACGCTTGGCTCGGGCCCAAGCCTTTGTGAATTTAGGCGAACCCAAAATTCCTGTTGCTTGA

Network for GWHGAAZE012386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00081.23	Sod_Fe_N	53	137	1.70E-19
PF02777.19	Sod_Fe_C	148	245	5.70E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04564	SOD2	MAPK signaling pathway - fly	map04013
		FoxO signaling pathway	map04068
		Peroxisome	map04146
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006801	biological_process	superoxide metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004784	molecular_function	superoxide dismutase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.145
	SRR3591706	second leaf	18.716
	SRR3591707	mature leaf	11.791
	SRR3591708	Shoot apex	45.701
	SRR3591709	Stem	8.287
	SRR3591710	White floral bud	12.682
	SRR3591711	White flower	24.087
	SRR3591712	Green floral bud	19.154
	SRR3591713	Yellow flower	22.374
SRP173429	SRR8316895	Juvenile bud stage	6.669
	SRR8316896	Juvenile bud stage	8.360
	SRR8316897	Juvenile bud stage	3.030
	SRR8316894	Third green stage	3.754
	SRR8316900	Third green stage	16.158
	SRR8316901	Third green stage	11.490
	SRR8316898	Complete white stage	3.244
	SRR8316899	Complete white stage	11.795
	SRR8316903	Complete white stage	4.533
	SRR8316902	Silver flowering stage	5.291
	SRR8316904	Silver flowering stage	6.245
	SRR8316905	Silver flowering stage	2.937
	SRR8316906	Gold flowering stage	11.446
	SRR8316907	Gold flowering stage	10.241
	SRR8316908	Gold flowering stage	10.115
SRP132670	SRR6706286	Control	2.892
	SRR6706287	Light intensity 50%	3.187
	SRR6706288	Light intensity 20%	4.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.878
	CNS0095593	Slightly white alabastrum(diploid) 2	6.622
	CNS0095594	Slightly white alabastrum(diploid) 3	6.101
	CNS0095595	Whole white alabastrum(diploid) 2	7.792
	CNS0095596	Whole white alabastrum(diploid) 3	7.798
	CNS0095597	Whole white alabastrum(diploid) 4	7.792
	CNS0095598	Silvery flower (diploied) 1	10.072
	CNS0095599	Silvery flower (diploied) 2	7.741
	CNS0095600	Silvery flower (diploied) 3	10.074
	CNS0095601	Golden flower (diploid) 1	7.738
	CNS0095602	Golden flower (diploid) 2	9.046
	CNS0095603	Golden flower (diploid) 3	7.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.400
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.262
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.974
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.684
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.138
	CNS0095610	Silvery flower (tetraploid) 1	9.390
	CNS0095611	Silvery flower (tetraploid) 2	13.493
	CNS0095612	Silvery flower (tetraploid) 3	10.014
	CNS0095613	Golden flower (tetraploid) 1	6.064
	CNS0095614	Golden flower (tetraploid) 2	8.535
	CNS0095615	Golden flower (tetraploid) 3	5.214
CRA001975	CRR073297	Stem 1	9.326
	CRR073298	Stem 2	7.178
	CRR073299	Stem 3	10.315
	CRR073300	Leaf 1	7.572
	CRR073301	Leaf 2	6.238
	CRR073302	Leaf 3	6.659
	CRR073303	Juvenile bud 1	7.739
	CRR073304	Juvenile bud 2	6.090
	CRR073305	Juvenile bud 3	5.081
	CRR073306	Third green 1	2.553
	CRR073307	Third green 2	2.307
	CRR073308	Third green 3	1.929
	CRR073309	Second white 1	6.836
	CRR073310	Second white 2	4.569
	CRR073311	Second white 3	4.425
	CRR073312	Silver flowering 1	2.736
	CRR073313	Silver flowering 2	1.429
	CRR073314	Silver flowering 3	2.802
	CRR073315	Gold flowering 1	16.595
	CRR073316	Gold flowering 2	22.558
	CRR073317	Gold flowering 3	10.554
	CRR073318	Tawny withering 1	7.260
	CRR073319	Tawny withering 2	11.564
	CRR073320	Tawny withering 3	8.005